Mark Alkema PhD
Title Assistant Professor
Institution University of Massachusetts Medical School
Department Neurobiology
Address University of Massachusetts Medical School
364 Plantation Street
Worcester MA 01605
Telephone 66158
Email
Other Positions
Institution UMMS - Graduate School of Biomedical Sciences
Department Neuroscience
Narrative

Biography

Mark Alkema received his B. Sc. (1990) from the University of Amsterdam and Ph.D. (1996) from the Netherlands Cancer Institute in Amsterdam. He received a Human Frontiers Science Program fellowship and a Merck / M.I.T. Fellowship to do postdoctoral work at the Massachusetts Institute of Technology in the laboratory of Bob Horvitz. He joined the Department of Neurobiology at the University of Massachusetts Medical School as a faculty member in June, 2005.

C. elegans Behavioral Genetics

University of Massachusetts Medical School UMass Mark Alkema, Ph.D. Our focus is to understand the molecular and cellular basis of behavioral plasticity. We are studying how the environment modulates behavior of the nematode Caenorhabditis elegans. The C. elegans nervous system is very simple and extraordinarily well described. The detailed knowledge  of the C. elegans nervous system combined with its amenability to genetic analysis and laser microsurgery allows us to define neural circuits that control behavior and study behavior at the molecular and cellular level.

How does the nervous system translate sensory information into behavioral response? Facing the complexity of the mammalian nervous system this fundamental question presents daunting task. Some of the rare cases where we actually know the neural path, from sensory input to motor output, have come from the analyses of escape responses in mollusks, crayfish and goldfish (Korn and Faber, 2005; Edwards et al., 2002; Allen et al., 2006). Defining sensorimotor circuits requires detailed knowledge of the neural connectivity of the nervous system, and the ability to manipulate the functions of the component neurons and to define and quantify the behavioral outputs. The simplicity and completely defined synaptic connectivity of C. elegans nervous system provides unique opportunity to dissect how neural networks control behavior. Moreover, the combination of powerful genetic methods, calcium imaging and electrophysiology allows us to address how the nervous controls behavior with a cellular and molecular resolution that cannot be readily attained in other systems.

C. elegans escape responseGentle touch elicits an escape response C. elegans where the animal displays characteristic sequence of behaviors to get away from the stimulus. C. elegans moves on its side by propagating a sinusoidal wave of body wall muscle contractions along the length of its body. C. elegans locomotion is accompanied by oscillatory head movements during which the tip of the nose moves rapidly from side to side. First, in response to touch to the anterior half of the body of the animal reverses its direction of locomotion (Chalfie et al., 1985). During this reversal the animals suppresses its lateral head movements (Alkema et al., 2005). Second, the reversal is followed by a deep ventral head bend. Third, the animal makes a sharp turn where it slides the head down the ventral side of the body. This sharp turn (Omega turn) results in approximately 180° change in locomotion anterior. Fourth, the animal resumes forward locomotion and exploratory head movements. Based on the strength of the stimulus the animal has to decide whether to engage in an escape response. Once it does, the animal needs coordinate distinct motor programs, generate asymmetry in its locomotion pattern to allow it to make a sharp turn before it returns to a base state. Our goal is to elucidate what neurons, neurotransmitters and receptors define neural circuits that control these motor programs, and how these motor programs are linked temporally in the execution of the worm escape response.

C. elegans escape response neural circuitOur previous work and that of others has provided some clues about the neurons that are required for these motor programs. The C. elegans neural wiring diagram and laser ablation experiments support a model in which the touch sensory neurons inhibit the forward locomotion command neurons and activate the backward command neurons causing the animal to move backward away from the stimulus. We have shown that the trace amine, tyramine, plays a crucial role in the coordination of the backing response and the suppression of head oscillations in the escape response. A pair of tyraminergic motorneurons is activated through gap junctions with the backward locomotion command neurons, triggering the release of tyramine (Alkema et al., 2005). Tyramine coordinates two motor programs by inhibiting the forward locomotion command neurons and directly hyperpolarizing neck muscles through the activation of a novel tyramine gated chloride channel, LGC-55 (Pirri et al., 2009).

In predator-prey experiments we have been able to show that the suppression of head movements allows the animal to escape from nematophagous fungi that entrap nematodes. Tyramine signaling mutants that fail to suppress head oscillations on response to touch are more likely to get caught in constricting hyphal rings that inflate upon contact (Maguire et al., 2011). Which neurons are required for the steep ventral head bend, and how the motor neurons in the ventral cord execute an omega turn is largely unknown. Moreover, it is not clear how a long reversal is coupled to an omega turn.

C. elegans caught by the nematophagous fungus, Drechslerella doedycoidesWhile we have shown that a fast acting ionotropic tyramine receptors is involved in the immediate suppression of head oscillations and reversal upon touch, the slower acting metabotropic tyramine receptors appear to be involved in the execution of the omega turn. We found that the G-protein coupled tyramine receptor, SER-2, is expressed in a subset of inhibitory GABAergic neurons that innervate body wall muscles on the ventral side of the animal. Our genetic and behavioral analyses indicate that SER-2 inhibits GABA release to allow the animal to hypercontract its ventral side during the execution of an omega turn. ser-2 mutants initiate a normal escape response but fail to touch head to tail during an omega turn. This suggests that aminergic modulation of ventral cord motorneurons may allow the animal to generate asymmetry in its locomotion pattern.

Ultimately, we hope that our studies will teach us more about the basic principles that underlie behavioral plasticity of more complex neural systems.

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  • Personnel

    University of Massachusetts Medical School UMass Jennifer PirriJennifer Pirri
    Graduate Student
    jennifer.pirri@umassmed.edu

    University of Massachusetts Medical School UMass Christopher ClarkChristopher Clark
    Graduate Student
    christopher.clark@umassmed.edu

    University of Massachusetts Medical School UMass Yung-Chi HuangYung-Chi Huang
    Graduate Student
    yung-chi.huang@umassmed.edu

    University of Massachusetts Medical School UMass Diego RayesDiego Rayes, Ph.D.
    Postdoctoral Fellow
    diego.rayes@umassmed.edu


    Lab Alumni

    University of Massachusetts Medical School UMass Jamie Donnelly, Ph.D.
    Jamie Donnelly, Ph.D.
    Graduate Student - 2011

    University of Massachusetts Medical School UMass Jasmin Abraham
    Jasmin Abraham
    Research Technician - 2010

    University of Massachusetts Medical School UMass Sean Maguire
    Sean Maguire
    Research Technician - 2010

    University of Massachusetts Medical School UMass Adam McPherson
    Adam McPherson
    Research Technician - 2008



    Publications
    1. Pirri JK, Alkema MJ. The neuroethology of C. elegans escape. Curr Opin Neurobiol. 2012 Jan 4.
      View in: PubMed
     
    2. Maguire SM, Clark CM, Nunnari J, Pirri JK, Alkema MJ. The C. elegans Touch Response Facilitates Escape from Predacious Fungi. Curr Biol. 2011 Aug 9; 21(15):1326-30.
      View in: PubMed
     
    3. Leifer AM, Fang-Yen C, Gershow M, Alkema MJ, Samuel AD. Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans. Nat Methods. 2011 Feb; 8(2):147-52.
      View in: PubMed
     
    4. Koon AC, Ashley J, Barria R, Dasgupta S, Brain R, Waddell S, Alkema MJ, Budnik V. Autoregulatory and paracrine control of synaptic and behavioral plasticity by octopaminergic signaling. Nat Neurosci. 2011 Feb; 14(2):190-9.
      View in: PubMed
     
    5. Grove CA, De Masi F, Barrasa MI, Newburger DE, Alkema MJ, Bulyk ML, Walhout AJ. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell. 2009 Jul 23; 138(2):314-27.
      View in: PubMed
     
    6. Pirri JK, McPherson AD, Donnelly JL, Francis MM, Alkema MJ. A tyramine-gated chloride channel coordinates distinct motor programs of a Caenorhabditis elegans escape response. Neuron. 2009 May 28; 62(4):526-38.
      View in: PubMed
     
    7. Alkema MJ. Oxygen sensation: into thick air. Curr Biol. 2009 May 26; 19(10):R407-9.
      View in: PubMed
     
    8. Alkema MJ, Hunter-Ensor M, Ringstad N, Horvitz HR. Tyramine Functions independently of octopamine in the Caenorhabditis elegans nervous system. Neuron. 2005 Apr 21; 46(2):247-60.
      View in: PubMed
     
    9. Akasaka T, van Lohuizen M, van der Lugt N, Mizutani-Koseki Y, Kanno M, Taniguchi M, Vidal M, Alkema M, Berns A, Koseki H. Mice doubly deficient for the Polycomb Group genes Mel18 and Bmi1 reveal synergy and requirement for maintenance but not initiation of Hox gene expression. Development. 2001 May; 128(9):1587-97.
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    10. Bel S, Coré N, Djabali M, Kieboom K, Van der Lugt N, Alkema MJ, Van Lohuizen M. Genetic interactions and dosage effects of Polycomb group genes in mice. Development. 1998 Sep; 125(18):3543-51.
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    11. Alkema MJ, Jacobs J, Voncken JW, Jenkins NA, Copeland NG, Satijn DP, Otte AP, Berns A, van Lohuizen M. MPc2, a new murine homolog of the Drosophila polycomb protein is a member of the mouse polycomb transcriptional repressor complex. J Mol Biol. 1997 Nov 14; 273(5):993-1003.
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    12. Alkema MJ, Jacobs H, van Lohuizen M, Berns A. Pertubation of B and T cell development and predisposition to lymphomagenesis in Emu Bmi1 transgenic mice require the Bmi1 RING finger. Oncogene. 1997 Aug 18; 15(8):899-910.
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    13. Satijn DP, Gunster MJ, van der Vlag J, Hamer KM, Schul W, Alkema MJ, Saurin AJ, Freemont PS, van Driel R, Otte AP. RING1 is associated with the polycomb group protein complex and acts as a transcriptional repressor. Mol Cell Biol. 1997 Jul; 17(7):4105-13.
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    14. Gunster MJ, Satijn DP, Hamer KM, den Blaauwen JL, de Bruijn D, Alkema MJ, van Lohuizen M, van Driel R, Otte AP. Identification and characterization of interactions between the vertebrate polycomb-group protein BMI1 and human homologs of polyhomeotic. Mol Cell Biol. 1997 Apr; 17(4):2326-35.
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    15. Alkema MJ, Bronk M, Verhoeven E, Otte A, van 't Veer LJ, Berns A, van Lohuizen M. Identification of Bmi1-interacting proteins as constituents of a multimeric mammalian polycomb complex. Genes Dev. 1997 Jan 15; 11(2):226-40.
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    16. van der Lugt NM, Alkema M, Berns A, Deschamps J. The Polycomb-group homolog Bmi-1 is a regulator of murine Hox gene expression. Mech Dev. 1996 Aug; 58(1-2):153-64.
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    17. Alkema MJ, van der Lugt NM, Bobeldijk RC, Berns A, van Lohuizen M. Transformation of axial skeleton due to overexpression of bmi-1 in transgenic mice. Nature. 1995 Apr 20; 374(6524):724-7.
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    18. Berns A, van der Lugt N, Alkema M, van Lohuizen M, Domen J, Acton D, Allen J, Laird PW, Jonkers J. Mouse model systems to study multistep tumorigenesis. Cold Spring Harb Symp Quant Biol. 1994; 59:435-47.
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    19. Alkema MJ, Wiegant J, Raap AK, Berns A, van Lohuizen M. Characterization and chromosomal localization of the human proto-oncogene BMI-1. Hum Mol Genet. 1993 Oct; 2(10):1597-603.
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    20. Winter AJ, Alkema MJ, Groot Koerkamp MJ, van der Horst G, Mul Y, Tabak HF. Interlocked circle formation by group I introns: structural requirements and mechanism. Nucleic Acids Res. 1993 Jul 11; 21(14):3217-26.
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    21. Verrijzer CP, Alkema MJ, van Weperen WW, Van Leeuwen HC, Strating MJ, van der Vliet PC. The DNA binding specificity of the bipartite POU domain and its subdomains. EMBO J. 1992 Dec; 11(13):4993-5003.
      View in: PubMed
     
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