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Calcium
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Genetic Markers
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MeSH semantic group name: Disorders
MeSH semantic group name: Phenomena
number of authors: 72
number of publications: 130
uniqueness weight: 0.968289
type: Concept

Mice
MeSH DescriptorUI: D051379
MeSH semantic group name: Living Beings
number of authors: 801
number of publications: 10846
uniqueness weight: 0.375037
type: Concept

DNA Primers
MeSH DescriptorUI: D017931
MeSH semantic group name: Chemicals & Drugs
number of authors: 159
number of publications: 293
uniqueness weight: 0.943618
type: Concept

Genetic Variation
MeSH DescriptorUI: D014644
MeSH semantic group name: Phenomena
number of authors: 161
number of publications: 383
uniqueness weight: 0.832032
type: Concept

DNA Mismatch Repair
MeSH DescriptorUI: D053843
MeSH semantic group name: Physiology
number of authors: 23
number of publications: 35
uniqueness weight: 0.959433
type: Concept

Models, Biological
MeSH DescriptorUI: D008954
MeSH semantic group name: Concepts & Ideas
MeSH semantic group name: Devices
number of authors: 397
number of publications: 1180
uniqueness weight: 0.678421
type: Concept

Kinetics
MeSH DescriptorUI: D007700
MeSH semantic group name: Concepts & Ideas
number of authors: 253
number of publications: 763
uniqueness weight: 0.857532
type: Concept

Mycobacterium smegmatis
MeSH DescriptorUI: D020102
MeSH semantic group name: Living Beings
number of authors: 14
number of publications: 67
uniqueness weight: 0.929757
type: Concept

Drug Evaluation, Preclinical
MeSH DescriptorUI: D004353
MeSH semantic group name: Procedures
number of authors: 70
number of publications: 98
uniqueness weight: 0.951695
type: Concept

Transcription, Genetic
MeSH DescriptorUI: D014158
MeSH semantic group name: Physiology
number of authors: 254
number of publications: 878
uniqueness weight: 0.730468
type: Concept

Adaptation, Physiological
MeSH DescriptorUI: D000222
MeSH semantic group name: Physiology
number of authors: 75
number of publications: 127
uniqueness weight: 0.906713
type: Concept

Molecular Structure
MeSH DescriptorUI: D015394
MeSH semantic group name: Genes & Molecular Sequences
number of authors: 119
number of publications: 385
uniqueness weight: 0.906709
type: Concept

Viral Proteins
MeSH DescriptorUI: D014764
MeSH semantic group name: Chemicals & Drugs
number of authors: 94
number of publications: 263
uniqueness weight: 0.853006
type: Concept

Repressor Proteins
MeSH DescriptorUI: D012097
MeSH semantic group name: Chemicals & Drugs
number of authors: 161
number of publications: 346
uniqueness weight: 0.837922
type: Concept

Kanamycin
MeSH DescriptorUI: D007612
MeSH semantic group name: Chemicals & Drugs
number of authors: 3
number of publications: 4
uniqueness weight: 0.998978
type: Concept

Tryptophan
MeSH DescriptorUI: D014364
MeSH semantic group name: Chemicals & Drugs
MeSH semantic group name: Disorders
number of authors: 36
number of publications: 57
uniqueness weight: 0.972509
type: Concept

Exons
MeSH DescriptorUI: D005091
MeSH semantic group name: Chemicals & Drugs
number of authors: 111
number of publications: 199
uniqueness weight: 0.920372
type: Concept

Cattle
MeSH DescriptorUI: D002417
MeSH semantic group name: Living Beings
number of authors: 142
number of publications: 310
uniqueness weight: 0.931346
type: Concept

Mutagenesis, Insertional
MeSH DescriptorUI: D016254
MeSH semantic group name: Disorders
MeSH semantic group name: Physiology
MeSH semantic group name: Procedures
number of authors: 53
number of publications: 89
uniqueness weight: 0.965013
type: Concept

Mice, Inbred C57BL
MeSH DescriptorUI: D008810
MeSH semantic group name: Living Beings
number of authors: 472
number of publications: 3396
uniqueness weight: 0.583871
type: Concept

Cell Polarity
MeSH DescriptorUI: D016764
MeSH semantic group name: Concepts & Ideas
number of authors: 62
number of publications: 109
uniqueness weight: 0.947925
type: Concept

Gene Expression Regulation
MeSH DescriptorUI: D005786
MeSH semantic group name: Physiology
number of authors: 432
number of publications: 1617
uniqueness weight: 0.600897
type: Concept

Male
MeSH DescriptorUI: D008297
MeSH semantic group name: Physiology
number of authors: 2235
number of publications: 29939
uniqueness weight: 0.228556
type: Concept

Mutation
MeSH DescriptorUI: D009154
MeSH semantic group name: Physiology
number of authors: 559
number of publications: 2615
uniqueness weight: 0.537721
type: Concept

Oligonucleotides
MeSH DescriptorUI: D009841
MeSH semantic group name: Chemicals & Drugs
number of authors: 75
number of publications: 221
uniqueness weight: 0.864859
type: Concept

Proteins
MeSH DescriptorUI: D011506
MeSH semantic group name: Chemicals & Drugs
number of authors: 242
number of publications: 750
uniqueness weight: 0.656606
type: Concept

Drug Resistance, Multiple, Bacterial
MeSH DescriptorUI: D024901
MeSH semantic group name: Physiology
number of authors: 33
number of publications: 57
uniqueness weight: 0.935612
type: Concept

Antigens, Bacterial
MeSH DescriptorUI: D000942
MeSH semantic group name: Chemicals & Drugs
number of authors: 53
number of publications: 199
uniqueness weight: 0.907971
type: Concept

Epitopes
MeSH DescriptorUI: D000939
MeSH semantic group name: Chemicals & Drugs
MeSH semantic group name: Phenomena
number of authors: 109
number of publications: 290
uniqueness weight: 0.904175
type: Concept

Female
MeSH DescriptorUI: D005260
MeSH semantic group name: Physiology
number of authors: 2284
number of publications: 32932
uniqueness weight: 0.215424
type: Concept

DNA Gyrase
MeSH DescriptorUI: D027081
MeSH semantic group name: Chemicals & Drugs
number of authors: 9
number of publications: 10
uniqueness weight: 0.99017
type: Concept

Exonucleases
MeSH DescriptorUI: D005092
MeSH semantic group name: Chemicals & Drugs
number of authors: 5
number of publications: 5
uniqueness weight: 0.996209
type: Concept

Tuberculosis
MeSH DescriptorUI: D014376
MeSH semantic group name: Disorders
number of authors: 69
number of publications: 295
uniqueness weight: 0.756552
type: Concept

RNA, Messenger
MeSH DescriptorUI: D012333
MeSH semantic group name: Chemicals & Drugs
number of authors: 413
number of publications: 1537
uniqueness weight: 0.645345
type: Concept

DNA, Superhelical
MeSH DescriptorUI: D004278
MeSH semantic group name: Chemicals & Drugs
number of authors: 4
number of publications: 4
uniqueness weight: 0.998904
type: Concept

Superoxide Dismutase
MeSH DescriptorUI: D013482
MeSH semantic group name: Chemicals & Drugs
number of authors: 71
number of publications: 225
uniqueness weight: 0.879142
type: Concept

DNA, Viral
MeSH DescriptorUI: D004279
MeSH semantic group name: Chemicals & Drugs
number of authors: 105
number of publications: 232
uniqueness weight: 0.913551
type: Concept

DNA, Bacterial
MeSH DescriptorUI: D004269
MeSH semantic group name: Chemicals & Drugs
number of authors: 77
number of publications: 267
uniqueness weight: 0.882067
type: Concept

Escherichia coli
MeSH DescriptorUI: D004926
MeSH semantic group name: Living Beings
number of authors: 173
number of publications: 707
uniqueness weight: 0.701804
type: Concept

Reactive Oxygen Species
MeSH DescriptorUI: D017382
MeSH semantic group name: Chemicals & Drugs
number of authors: 113
number of publications: 224
uniqueness weight: 0.90134
type: Concept

Cattle Diseases
MeSH DescriptorUI: D002418
MeSH semantic group name: Disorders
number of authors: 10
number of publications: 10
uniqueness weight: 0.98855
type: Concept

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Genetic Engineering
MeSH DescriptorUI: D005818
MeSH semantic group name: Procedures
number of authors: 66
number of publications: 117
uniqueness weight: 0.909045
type: Concept

Genes, Bacterial
MeSH DescriptorUI: D005798
MeSH semantic group name: Genes & Molecular Sequences
number of authors: 39
number of publications: 120
uniqueness weight: 0.950947
type: Concept

DNA, Recombinant
MeSH DescriptorUI: D004274
MeSH semantic group name: Chemicals & Drugs
MeSH semantic group name: Concepts & Ideas
MeSH semantic group name: Genes & Molecular Sequences
MeSH semantic group name: Procedures
number of authors: 31
number of publications: 47
uniqueness weight: 0.980235
type: Concept

Genes, Reporter
MeSH DescriptorUI: D017930
MeSH semantic group name: Genes & Molecular Sequences
number of authors: 147
number of publications: 257
uniqueness weight: 0.929515
type: Concept

Recombinases
MeSH DescriptorUI: D045522
MeSH semantic group name: Chemicals & Drugs
number of authors: 2
number of publications: 2
uniqueness weight: 0.997829
type: Concept

Escherichia coli O157
MeSH DescriptorUI: D019453
MeSH semantic group name: Living Beings
number of authors: 11
number of publications: 20
uniqueness weight: 0.984237
type: Concept

Bacteriophage lambda
MeSH DescriptorUI: D010582
MeSH semantic group name: Living Beings
number of authors: 8
number of publications: 18
uniqueness weight: 0.990676
type: Concept

Cell Membrane
MeSH DescriptorUI: D002462
MeSH semantic group name: Anatomy
number of authors: 190
number of publications: 496
uniqueness weight: 0.817538
type: Concept

Conjugation, Genetic
MeSH DescriptorUI: D003227
MeSH semantic group name: Physiology
number of authors: 7
number of publications: 16
uniqueness weight: 0.996575
type: Concept

Crystallography, X-Ray
MeSH DescriptorUI: D018360
MeSH semantic group name: Procedures
number of authors: 121
number of publications: 433
uniqueness weight: 0.896231
type: Concept

Escherichia coli Proteins
MeSH DescriptorUI: D029968
MeSH semantic group name: Chemicals & Drugs
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number of publications: 271
uniqueness weight: 0.810619
type: Concept

Green Fluorescent Proteins
MeSH DescriptorUI: D049452
MeSH semantic group name: Chemicals & Drugs
number of authors: 167
number of publications: 367
uniqueness weight: 0.879107
type: Concept

S-Adenosylmethionine
MeSH DescriptorUI: D012436
MeSH semantic group name: Chemicals & Drugs
number of authors: 18
number of publications: 28
uniqueness weight: 0.97125
type: Concept

Reverse Transcriptase Polymerase Chain Reaction
MeSH DescriptorUI: D020133
MeSH semantic group name: Procedures
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number of publications: 542
uniqueness weight: 0.892934
type: Concept

Bacterial Proteins
MeSH DescriptorUI: D001426
MeSH semantic group name: Chemicals & Drugs
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number of publications: 768
uniqueness weight: 0.650191
type: Concept

Recombinant Fusion Proteins
MeSH DescriptorUI: D011993
MeSH semantic group name: Chemicals & Drugs
number of authors: 206
number of publications: 489
uniqueness weight: 0.869329
type: Concept

Sheep
MeSH DescriptorUI: D012756
MeSH semantic group name: Living Beings
number of authors: 68
number of publications: 179
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type: Concept

Mycolic Acids
MeSH DescriptorUI: D009171
MeSH semantic group name: Chemicals & Drugs
number of authors: 8
number of publications: 15
uniqueness weight: 0.994954
type: Concept

Exodeoxyribonuclease V
MeSH DescriptorUI: D043211
MeSH semantic group name: Chemicals & Drugs
number of authors: 3
number of publications: 9
uniqueness weight: 0.996913
type: Concept

DNA Polymerase III
MeSH DescriptorUI: D004258
MeSH semantic group name: Chemicals & Drugs
number of authors: 14
number of publications: 28
uniqueness weight: 0.978822
type: Concept

Glutamate Decarboxylase
MeSH DescriptorUI: D005968
MeSH semantic group name: Chemicals & Drugs
number of authors: 16
number of publications: 22
uniqueness weight: 0.992235
type: Concept

Gene Targeting
MeSH DescriptorUI: D018390
MeSH semantic group name: Procedures
number of authors: 49
number of publications: 77
uniqueness weight: 0.959284
type: Concept

Phosphoproteins
MeSH DescriptorUI: D010750
MeSH semantic group name: Chemicals & Drugs
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number of publications: 220
uniqueness weight: 0.892836
type: Concept

Binding Sites
MeSH DescriptorUI: D001665
MeSH semantic group name: Chemicals & Drugs
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number of publications: 906
uniqueness weight: 0.81927
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Genotype
MeSH DescriptorUI: D005838
MeSH semantic group name: Physiology
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number of publications: 663
uniqueness weight: 0.844086
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Gene Library
MeSH DescriptorUI: D015723
MeSH semantic group name: Chemicals & Drugs
MeSH semantic group name: Genes & Molecular Sequences
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number of publications: 102
uniqueness weight: 0.956875
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Mutagenesis
MeSH DescriptorUI: D016296
MeSH semantic group name: Physiology
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number of publications: 133
uniqueness weight: 0.948445
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Microbial Sensitivity Tests
MeSH DescriptorUI: D008826
MeSH semantic group name: Procedures
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number of publications: 205
uniqueness weight: 0.919851
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Adhesins, Bacterial
MeSH DescriptorUI: D018829
MeSH semantic group name: Chemicals & Drugs
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number of publications: 10
uniqueness weight: 0.996478
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Prophages
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MeSH semantic group name: Living Beings
number of authors: 4
number of publications: 6
uniqueness weight: 0.995623
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Reproducibility of Results
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number of publications: 1655
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Genetics, Microbial
MeSH DescriptorUI: D005827
MeSH semantic group name: Occupations
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number of publications: 11
uniqueness weight: 0.984784
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Macromolecular Substances
MeSH DescriptorUI: D046911
MeSH semantic group name: Chemicals & Drugs
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number of publications: 160
uniqueness weight: 0.952636
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CD4-Positive T-Lymphocytes
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MeSH semantic group name: Anatomy
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number of publications: 641
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Antitubercular Agents
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number of publications: 84
uniqueness weight: 0.922898
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Substrate Specificity
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MeSH semantic group name: Concepts & Ideas
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number of publications: 339
uniqueness weight: 0.913361
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Drug Resistance, Bacterial
MeSH DescriptorUI: D024881
MeSH semantic group name: Physiology
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number of publications: 92
uniqueness weight: 0.931587
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Models, Molecular
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MeSH semantic group name: Concepts & Ideas
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number of publications: 1150
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DNA Replication
MeSH DescriptorUI: D004261
MeSH semantic group name: Physiology
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number of publications: 236
uniqueness weight: 0.848134
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Aspartic Acid Endopeptidases
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MeSH semantic group name: Chemicals & Drugs
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number of publications: 37
uniqueness weight: 0.980778
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Oligonucleotide Array Sequence Analysis
MeSH DescriptorUI: D020411
MeSH semantic group name: Devices
MeSH semantic group name: Procedures
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number of publications: 297
uniqueness weight: 0.901985
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Point Mutation
MeSH DescriptorUI: D017354
MeSH semantic group name: Physiology
number of authors: 107
number of publications: 166
uniqueness weight: 0.942946
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Hydrolysis
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MeSH semantic group name: Phenomena
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number of publications: 144
uniqueness weight: 0.959689
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Chromatography
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MeSH semantic group name: Procedures
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number of publications: 16
uniqueness weight: 0.993476
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Polymerase Chain Reaction
MeSH DescriptorUI: D016133
MeSH semantic group name: Procedures
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number of publications: 517
uniqueness weight: 0.883465
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Swine
MeSH DescriptorUI: D013552
MeSH semantic group name: Living Beings
number of authors: 176
number of publications: 380
uniqueness weight: 0.908113
type: Concept

DNA Repair
MeSH DescriptorUI: D004260
MeSH semantic group name: Physiology
number of authors: 77
number of publications: 248
uniqueness weight: 0.857742
type: Concept

Bacteria
MeSH DescriptorUI: D001419
MeSH semantic group name: Living Beings
number of authors: 122
number of publications: 306
uniqueness weight: 0.792116
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Host-Pathogen Interactions
MeSH DescriptorUI: D054884
MeSH semantic group name: Phenomena
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number of publications: 262
uniqueness weight: 0.824322
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Protein Conformation
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MeSH semantic group name: Concepts & Ideas
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number of publications: 780
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Phenotype
MeSH DescriptorUI: D010641
MeSH semantic group name: Physiology
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number of publications: 1208
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Gene Deletion
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MeSH semantic group name: Physiology
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number of publications: 309
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Genetic Vectors
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MeSH semantic group name: Living Beings
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Polyketide Synthases
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Single-Strand Specific DNA and RNA Endonucleases
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MeSH semantic group name: Chemicals & Drugs
number of authors: 5
number of publications: 5
uniqueness weight: 0.995196
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Recombination, Genetic
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Gene Knockout Techniques
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number of publications: 95
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Base Sequence
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MeSH semantic group name: Genes & Molecular Sequences
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uniqueness weight: 0.813172
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Alleles
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MeSH semantic group name: Genes & Molecular Sequences
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number of publications: 448
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Plasmids
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number of publications: 292
uniqueness weight: 0.925174
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Cloning, Molecular
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MeSH semantic group name: Procedures
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number of publications: 383
uniqueness weight: 0.928101
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Gene Expression Regulation, Bacterial
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number of publications: 164
uniqueness weight: 0.884523
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Molecular Sequence Data
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number of publications: 1991
uniqueness weight: 0.766262
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DNA Transposable Elements
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number of publications: 140
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Enterohemorrhagic Escherichia coli
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number of publications: 13
uniqueness weight: 0.990019
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Chromatography, DEAE-Cellulose
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MeSH semantic group name: Procedures
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number of publications: 3
uniqueness weight: 0.999843
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UMass Chan Medical School
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Murphy, Kenan
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Lab URL: https://www.umassmed.edu/maps/research-labs/murphy/
Rotation Projects: Rotation Projects Study the interaction of the ssDNA annealing protein Bet and its cognate exonuclease with dsDNA ends. Compare wild type Bet with one or mutant Bet proteins. Use both genetic and biochemical studies to answer the question of how this annealase binds to ssDNA and promotes recombination. Develop recombineering technologies for M. tuberculosis involving the electroporation of oligos containing clinically relevant single nucleotide polymorphisms (SNPs). Generate a recombineering system for Pseudomonas aeruginosa via the electroporation of PCR substrates into electrocompetent cells containing PA phage Red-like recombination systems.
Summary: Focus: DNA Mismatch repair mechanisms in M. smegmatis; recombineering technology for gene replacement in bacterial pathogens, M. tuberculosis drug discovery.
preferred title: Assistant Professor

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Type VII Secretion Systems
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Protein Domains
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Gene-Environment Interaction
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Homologous Recombination
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Microbiology
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Assistant Professor
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