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RNA
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Protein Subunits
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RNA, Helminth
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Folic Acid
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DNA-Binding Proteins
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RNA, Small Interfering
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Histone Chaperones
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Methionine Adenosyltransferase
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Niacinamide
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Fasting
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Humans
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Mitochondria
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Mitogen-Activated Protein Kinases
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Cell Nucleus
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Naphthols
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p38 Mitogen-Activated Protein Kinases
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Gene Expression
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Caenorhabditis elegans
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Mutagenesis, Site-Directed
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Sterol Regulatory Element Binding Protein 2
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Sterol Regulatory Element Binding Proteins
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Histone Code
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Phylogeny
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Open Reading Frames
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Animals
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Homeostasis
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DNA
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Luminescent Proteins
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Algorithms
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Saccharomyces cerevisiae
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Peptide Fragments
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Databases, Genetic
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Germ Cells
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Nuclear Proteins
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Intracellular Membranes
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Recombinant Proteins
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Genes, Helminth
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Longevity
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Genome
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Chromatin
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Transcriptional Elongation Factors
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Mice
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Sperm-Ovum Interactions
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Aging
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DNA Primers
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Models, Biological
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ADP-Ribosylation Factor 1
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Hep G2 Cells
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Electrons
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Transcription, Genetic
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Gene Expression Regulation, Developmental
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Repressor Proteins
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Conserved Sequence
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Immunity, Innate
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Diabetes Mellitus, Type 2
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Phosphatidic Acids
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Mice, Inbred C57BL
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Gene Expression Regulation
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Cyclin-Dependent Kinase 9
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Ubiquinone
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Animals, Genetically Modified
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Phosphatidylcholines
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Oxygen
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Transcription Factor TFIID
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Signal Transduction
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Drosophila
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Female
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RNA, Messenger
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Cell Proliferation
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Biological Transport
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Rabbits
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Sirtuin 1
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Liver
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Protein Structure, Tertiary
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Microscopy, Fluorescence
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Diglycerides
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Synapses
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Expressed Sequence Tags
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GTP Phosphohydrolases
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Zygote
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Positive Transcriptional Elongation Factor B
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Lipogenesis
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Green Fluorescent Proteins
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S-Adenosylmethionine
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Reverse Transcriptase Polymerase Chain Reaction
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Models, Animal
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Recombinant Fusion Proteins
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Models, Genetic
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RNA Polymerase II
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Protein Stability
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Pseudomonas aeruginosa
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Acetylation
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Fungal Proteins
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Binding Sites
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Saccharomyces cerevisiae Proteins
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Transcription Factors
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Sirtuins
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Fumarates
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Electron Transport
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Sequence Homology, Amino Acid
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Succinate Dehydrogenase
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Genome-Wide Association Study
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Fatty Liver
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Benzamides
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Cell Line
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Histones
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Gene Silencing
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Histone-Lysine N-Methyltransferase
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Molecular Sequence Data
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Program in Molecular Medicine
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type: Organization

UMass Chan Medical School
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Walker, Amy
first name: Amy
last name: Walker
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Rotation Projects: Determine links between SREBPs, SAMe levels and epigenetic regulation Methylation of histones or DNA affects gene expression at local as well as global levels. The major cellular methyl donor, s-adenosylmethionine (SAMe) is produced by the folate or 1-carbon (1C) cycle. 1CC function may be affected by dietary levels of folate, methionine, choline or betaine, genetic polymorphisms, or alcohol intake, linking potential for epigenetic modification in cancer progression to food intake and metabolism. Physiological limitation of 1CC function has multiple deleterious physiological effects from birth defects to the development of hepatosteatosis and has also been linked to hepatic and colon cancer. While many studies have shown that the availability of methyl donors may dramatically affect human disease, the mechanisms governing SAMe production and epigenetic modification are much less clear. We hypothesize that modulation of SBP-1 function affecting sams-1 expression will also alter methyl group levels and subsequently, histone modification, leading to changes in gene expression relevant to overall nutritional homeostasis. We will determine if modulation of SAMe levels through SBP-1 effects histone methylation at nutritionally important promoters and examine how diet quality and dietary supplementation affect SBP-1 activity by evaluating histone methylation, in addition to employing biological assays for epigenetic changes in gene expression. We will also use unbiased assays such as ChIP-Seq to identify genes whose expression levels are linked to epigenetic changes after sbp-1 RNAi, selecting those with roles in metabolism for further study. These studies will provide a basis for understanding how lipid homeostasis and other dietary influences affect SAMe production and how those are linked to increased lipid accumulation in C. elegans. Future studies will extend these models to mammalian systems to investigate how these changes predispose hepatosteatosis, a component of …
Rotation Projects: Determine mechanisms for differential regulation of SREBP-1 and SREBP-2 by PC-based feedback In recent studies, we have found that inactive precursors for SREBP-1 are cleaved, accumulate in the nucleus and activate lipogenic transcription programs when membrane changes linked to low PC levels alter localization of SREBP-activating proteases (see Research Interests). We also found that SREBP-2 was resistant to this regulation (Figure 1), and note that while mouse models of PC depletion are associated with hepatic steatosis, cholesterol levels are not necessarily affected (Jacobs, et al. 2008, JBC). We will determine the mechanisms of this differential regulation which will be important for understanding how lipid or cholesterol synthesis may be inappropriately stimulated in metabolic disease. Figure 1: Depletion of PC biosynthesis enzymes in HepG2 human hepatoma cells causes nuclear localization of SREBP-1, but not SREBP-2. Yellow line shows cell boundary
Rotation Projects: Identify cellular responses to decreased SAMe production Our studies in C. elegans showed that SREBP transcriptional activators could control expression 1CC genes. These studies are important because they demonstrate that levels of these critical enzymes mRNAa are not controlled as a “housekeeping function” but are instead are coordinated with other cellular processes. We have developed two models for 1CC dysfunction in C. elegans, a genetic model based on loss of function (lof) of sams-1, a SBP-1/SREBP responsive gene encoding the enzyme for producing the methyl donor SAMe and a dietary model in which C. elegans are fed bacteria unable to synthesize folate. In both of these models, transcription of lipogenic genes are highly increased and sams-1(lof) worms accumulate large lipid droplets, mimicking aspects of fatty liver disease in mammals. These models will allow use genetic screens as a tool for identifying 1) other regulatory pathways affecting SAMe production or utilization and 2) cellular responses that limit lipogenesis when methyl donor levels are low.
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