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James P Hughes MD

TitleAssistant Professor
InstitutionUniversity of Massachusetts Medical School
DepartmentOtolaryngology
Address159 Union Street, Suite 102
Marlborough MA 01752
Phone508-752-3439
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    Other Positions
    InstitutionUMMS - School of Medicine
    DepartmentOtolaryngology


    Collapse Biography 
    Collapse education and training
    University of Michigan, Ann Arbor, Ann Arbor, MI, United StatesBSScience
    Clark University, Worcester, MA, United StatesMBABusiness
    Clark University, Worcester, MA, United StatesMHAHealth
    Wayne State University School of Medicine, Detroit, MI, United StatesMD

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Forward T, Meites E, Lin J, Hughes JP, Unger ER, Markowitz LE, Golden M, Swanson F, Faestel PM, Winer RL. Sensitivity of Self-reported HPV Vaccination History among 18-26 year-old Men Who Have Sex with Men - Seattle, Washington, 2016-2018. Sex Transm Dis. 2021 Jun 22. PMID: 34166303.
      View in: PubMed
    2. Williamson BD, Hughes JP, Willis AD. A multi-view model for relative and absolute microbial abundances. Biometrics. 2021 May 28. PMID: 34048057.
      View in: PubMed
    3. Irvin R, Gamble T, Malone J, Wang Z, Wilson E, Hughes JP, Farley J, Mayer KH, Del Rio C, Batey DS, Cummings V, Remien RH, Beyrer C, Thio CL. HPTN 078: High Prevalence of HCV Antibodies Among Urban U.S. Men Who Have Sex with Men (MSM) Independent of HIV Status. Clin Infect Dis. 2020 Dec 21. PMID: 33346798.
      View in: PubMed
    4. Newman KL, Rogers JH, McCulloch D, Wilcox N, Englund JA, Boeckh M, Uyeki TM, Jackson ML, Starita L, Hughes JP, Chu HY. Point-of-care molecular testing and antiviral treatment of influenza in residents of homeless shelters in Seattle, WA: study protocol for a stepped-wedge cluster-randomized controlled trial. Trials. 2020 Nov 23; 21(1):956. PMID: 33228787.
      View in: PubMed
    5. Mitchell KM, Dimitrov D, Hughes JP, Moore M, Vittinghoff E, Liu A, Cohen MS, Beyrer C, Donnell D, Boily MC. Assessing the use of surveillance data to estimate the impact of prevention interventions on HIV incidence in cluster-randomized controlled trials. Epidemics. 2020 Nov 20; 33:100423. PMID: 33285419.
      View in: PubMed
    6. Barbee LA, Soge OO, Morgan J, Leclair A, Bass T, Werth BJ, Hughes JP, Golden MR. Gentamicin Alone Is Inadequate to Eradicate Neisseria Gonorrhoeae From the Pharynx. Clin Infect Dis. 2020 11 05; 71(8):1877-1882. PMID: 31712813.
      View in: PubMed
    7. Tordoff DM, Barbee LA, Khosropour CM, Hughes JP, Golden MR. Derivation and Validation of an HIV Risk Prediction Score Among Gay, Bisexual, and Other Men Who Have Sex With Men to Inform PrEP Initiation in an STD Clinic Setting. J Acquir Immune Defic Syndr. 2020 11 01; 85(3):263-271. PMID: 32658131.
      View in: PubMed
    8. Fogel JM, Bonsall D, Cummings V, Bowden R, Golubchik T, de Cesare M, Wilson EA, Gamble T, Del Rio C, Batey DS, Mayer KH, Farley JE, Hughes JP, Remien RH, Beyrer C, Fraser C, Eshleman SH. Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load. J Antimicrob Chemother. 2020 Aug 08. PMID: 32772080.
      View in: PubMed
    9. Srinivasan S, Chambers LC, Tapia KA, Hoffman NG, Munch MM, Morgan JL, Domogala D, Lowens MS, Proll S, Huang ML, Soge OO, Jerome KR, Golden MR, Hughes JP, Fredricks DN, Manhart LE. Urethral microbiota in men: Association of Haemophilus influenzae and Mycoplasma penetrans with nongonococcal urethritis. Clin Infect Dis. 2020 Aug 05. PMID: 32750107.
      View in: PubMed
    10. Wanga V, Omollo V, Bukusi EA, Odoyo JB, Morton JF, Kidoguchi L, Johnson R, Hughes JP, Celum C, Baeten JM. Uptake and impact of facility-based HIV self-testing on PrEP delivery: a pilot study among young women in Kisumu, Kenya. J Int AIDS Soc. 2020 08; 23(8):e25561. PMID: 32820597.
      View in: PubMed
    11. Dimitrov D, Moore JR, Wood D, Mitchell KM, Li M, Hughes JP, Donnell DJ, Mannheimer S, Holtz TH, Grant RM, Boily MC. Predicted Effectiveness of Daily and Nondaily Preexposure Prophylaxis for Men Who Have Sex With Men Based on Sex and Pill-taking Patterns From the Human Immuno Virus Prevention Trials Network 067/ADAPT Study. Clin Infect Dis. 2020 Jul 11; 71(2):249-255. PMID: 31437276.
      View in: PubMed
    12. Li F, Hughes JP, Hemming K, Taljaard M, Melnick ER, Heagerty PJ. Mixed-effects models for the design and analysis of stepped wedge cluster randomized trials: An overview. Stat Methods Med Res. 2020 Jul 06; 962280220932962. PMID: 32631142.
      View in: PubMed
    13. Silhol R, Boily MC, Dimitrov D, German D, Flynn C, Farley JE, Gelman M, Hughes JP, Donnell D, Adeyeye A, Remien RH, Beyrer C, Paz-Bailey G, Wejnert C, Mitchell KM. Understanding the HIV Epidemic Among MSM in Baltimore: A Modeling Study Estimating the Impact of Past HIV Interventions and Who Acquired and Contributed to Infections. . 2020 Jul 01; 84(3):253-262. PMID: 32141958.
      View in: PubMed
    14. Velloza J, Heffron R, Amico KR, Rowhani-Rahbar A, Hughes JP, Li M, Dye BJ, Celum C, Bekker LG, Grant RM. The Effect of Depression on Adherence to HIV Pre-exposure Prophylaxis Among High-Risk South African Women in HPTN 067/ADAPT. AIDS Behav. 2020 Jul; 24(7):2178-2187. PMID: 31955360.
      View in: PubMed
    15. Goin DE, Pearson RM, Craske MG, Stein A, Pettifor A, Lippman SA, Kahn K, Neilands TB, Hamilton EL, Selin A, MacPhail C, Wagner RG, Gomez-Olive FX, Twine R, Hughes JP, Agyei Y, Laeyendecker O, Tollman S, Ahern J. Depression and Incident HIV in Adolescent Girls and Young Women in HIV Prevention Trials Network 068: Targets for Prevention and Mediating Factors. Am J Epidemiol. 2020 05 05; 189(5):422-432. PMID: 31667490.
      View in: PubMed
    16. Rao DW, Hughes JP, Brady K, Golden MR. The Potential Impact of One-Time Routine HIV Screening on Prevention and Clinical Outcomes in the United States: A Model-Based Analysis. Sex Transm Dis. 2020 05; 47(5):306-313. PMID: 32044862.
      View in: PubMed
    17. Avoundjian T, Dombrowski JC, Golden MR, Hughes JP, Guthrie BL, Baseman J, Sadinle M. Comparing Methods for Record Linkage for Public Health Action: Matching Algorithm Validation Study. JMIR Public Health Surveill. 2020 04 30; 6(2):e15917. PMID: 32352389.
      View in: PubMed
    18. Giovenco D, Kahn K, Hughes JP, MacPhail C, Wagner R, Pettifor A. Self-Esteem as an Indicator of Transactional Sex Among Young Women in Rural South Africa (HPTN 068). AIDS Behav. 2020 Mar; 24(3):823-826. PMID: 31624977.
      View in: PubMed
    19. Fogel JM, Sivay MV, Cummings V, Wilson EA, Hart S, Gamble T, Laeyendecker O, Fernandez RE, Del Rio C, Batey DS, Mayer KH, Farley JE, McKinstry L, Hughes JP, Remien RH, Beyrer C, Eshleman SH. HIV drug resistance in a cohort of HIV-infected MSM in the United States. AIDS. 2020 01 01; 34(1):91-101. PMID: 31634196.
      View in: PubMed
    20. Chambers LC, Jensen JS, Morgan JL, Lowens MS, Romano SS, Totten PA, Soge OO, Hughes JP, Golden MR, Manhart LE. Lack of Association Between the S83I ParC Mutation in Mycoplasma genitalium and Treatment Outcomes Among Men Who Have Sex With Men with Nongonococcal Urethritis. Sex Transm Dis. 2019 12; 46(12):805-809. PMID: 31259853.
      View in: PubMed
    21. Velloza J, Bacchetti P, Hendrix CW, Murnane P, Hughes JP, Li M, Curlin ME, Holtz TH, Mannheimer S, Marzinke MA, Amico KR, Liu A, Piwowar-Manning E, Eshleman SH, Dye BJ, Gandhi M, Grant RM. Short- and Long-Term Pharmacologic Measures of HIV Pre-exposure Prophylaxis Use Among High-Risk Men Who Have Sex With Men in HPTN 067/ADAPT. . 2019 10 01; 82(2):149-158. PMID: 31335588.
      View in: PubMed
    22. Holtz TH, Chitwarakorn A, Hughes JP, Curlin ME, Varangrat A, Li M, Amico KR, Mock PA, Grant RM. HPTN 067/ADAPT: Correlates of Sex-Related Pre-exposure Prophylaxis Adherence, Thai Men Who Have Sex With Men, and Transgender Women, 2012-2013. J Acquir Immune Defic Syndr. 2019 10 01; 82(2):e18-e26. PMID: 31490342.
      View in: PubMed
    23. Stoner MCD, Neilands TB, Kahn K, Hughes JP, Gómez-Olivé FX, Twine R, Tollman S, Laeyendecker O, MacPhail C, Ahern J, Lippman SA, Pettifor A. Multilevel Measures of Education and Pathways to Incident Herpes Simplex Virus Type 2 in Adolescent Girls and Young Women in South Africa. J Adolesc Health. 2019 12; 65(6):723-729. PMID: 31521513.
      View in: PubMed
    24. Ojeda VD, Amico KR, Hughes JP, Wilson E, Li M, Holtz TH, Chitwarakorn A, Grant RM, Dye BJ, Bekker LG, Mannheimer S, Marzinke M, Hendrix CW. Low Disclosure of PrEP Nonadherence and HIV-Risk Behaviors Associated With Poor HIV PrEP Adherence in the HPTN 067/ADAPT Study. . 2019 09 01; 82(1):34-40. PMID: 31169769.
      View in: PubMed
    25. Nguyen N, Powers KA, Miller WC, Howard AG, Halpern CT, Hughes JP, Wang J, Twine R, Gomez-Olive FX, MacPhail C, Kahn K, Pettifor AE. Sexual Partner Types and Incident HIV Infection Among Rural South African Adolescent Girls and Young Women Enrolled in HPTN 068: A Latent Class Analysis. . 2019 09 01; 82(1):24-33. PMID: 31169772.
      View in: PubMed
    26. Giovenco D, Pettifor A, MacPhail C, Kahn K, Wagner R, Piwowar-Manning E, Wang J, Hughes JP. Assessing risk for HIV infection among adolescent girls in South Africa: an evaluation of the VOICE risk score (HPTN 068). J Int AIDS Soc. 2019 07; 22(7):e25359. PMID: 31353814.
      View in: PubMed
    27. Muni K, Kobusingye O, Mock C, Hughes JP, Hurvitz PM, Guthrie B. Motorcycle taxi programme is associated with reduced risk of road traffic crash among motorcycle taxi drivers in Kampala, Uganda. Int J Inj Contr Saf Promot. 2019 Sep; 26(3):294-301. PMID: 31180261.
      View in: PubMed
    28. Xi LF, Schiffman M, Hughes JP, Galloway DA, Koutsky LA, Kiviat NB. Changes in DNA Level of Oncogenic Human Papillomaviruses Other Than Types 16 and 18 in Relation to Risk of Cervical Intraepithelial Neoplasia Grades 2 and 3. Cancer Epidemiol Biomarkers Prev. 2019 08; 28(8):1388-1394. PMID: 31101617.
      View in: PubMed
    29. Stoner MCD, Dennis AM, Hughes JP, Eshleman SH, Sivay MV, Hudelson SE, Grabowski MK, Gómez-Olivé FX, MacPhail C, Piwowar-Manning E, Kahn K, Pettifor A. Characteristics Associated With Human Immunodeficiency Virus Transmission Networks Involving Adolescent Girls and Young Women in Human Immunodeficiency Virus Prevention Trials Network 068 Study. Sex Transm Dis. 2019 05; 46(5):e46-e49. PMID: 30985638.
      View in: PubMed
    30. Mannheimer S, Hirsch-Moverman Y, Franks J, Loquere A, Hughes JP, Li M, Amico KR, Grant RM. Factors Associated With Sex-Related Pre-exposure Prophylaxis Adherence Among Men Who Have Sex With Men in New York City in HPTN 067. . 2019 04 15; 80(5):551-558. PMID: 30865051.
      View in: PubMed
    31. Rao DW, Carr J, Naismith K, Hood JE, Hughes JP, Morris M, Goodreau SM, Rosenberg ES, Golden MR. Monitoring HIV Preexposure Prophylaxis Use Among Men Who Have Sex With Men in Washington State: Findings From an Internet-Based Survey. Sex Transm Dis. 2019 04; 46(4):221-228. PMID: 30870322.
      View in: PubMed
    32. Mitchell KM, Hoots B, Dimitrov D, German D, Flynn C, Farley JE, Gelman M, Hughes JP, Donnell D, Adeyeye A, Remien RH, Beyrer C, Paz-Bailey G, Boily MC. Improvements in the HIV care continuum needed to meaningfully reduce HIV incidence among men who have sex with men in Baltimore, US: a modelling study for HPTN 078. J Int AIDS Soc. 2019 03; 22(3):e25246. PMID: 30868739.
      View in: PubMed
    33. Stoner MCD, Nguyen N, Kilburn K, Gómez-Olivé FX, Edwards JK, Selin A, Hughes JP, Agyei Y, Macphail C, Kahn K, Pettifor A. Age-disparate partnerships and incident HIV infection in adolescent girls and young women in rural South Africa. AIDS. 2019 01 27; 33(1):83-91. PMID: 30289813.
      View in: PubMed
    34. Sivay MV, Fogel JM, Wang J, Zhang Y, Piwowar-Manning E, Clarke W, Breaud A, Blankson J, Hamilton EL, Kahn K, Selin A, Gomez-Olive FX, MacPhail C, Hughes JP, Pettifor A, Eshleman SH. Natural control of HIV infection in young women in South Africa: HPTN 068. HIV Clin Trials. 2018 10; 19(5):202-208. PMID: 30522410.
      View in: PubMed
    35. Muni K, Kobusingye O, Mock C, Hughes JP, Hurvitz PM, Guthrie B. Motorcycle taxi programme increases safe riding behaviours among its drivers in Kampala, Uganda. Inj Prev. 2020 02; 26(1):5-10. PMID: 30472678.
      View in: PubMed
    36. Zhang Y, Sivay MV, Hudelson SE, Clarke W, Breaud A, Wang J, Piwowar-Manning E, Agyei Y, Fogel JM, Hamilton EL, Selin A, MacPhail C, Kahn K, Gómez-Olivé FX, Hughes JP, Pettifor A, Eshleman SH. Antiretroviral Drug Use and HIV Drug Resistance Among Young Women in Rural South Africa: HPTN 068. . 2018 11 01; 79(3):315-322. PMID: 29985265.
      View in: PubMed
    37. Hanscom B, Hughes JP, Williamson BD, Donnell D. Adaptive non-inferiority margins under observable non-constancy. Stat Methods Med Res. 2019 Oct-Nov; 28(10-11):3318-3332. PMID: 30293490.
      View in: PubMed
    38. Chambers LC, Morgan JL, Lowens MS, Robinson TS, Romano SS, Leipertz GL, Hughes JP, Golden MR, Khosropour CM, Fredricks DN, Manhart LE. Cross-sectional study of urethral exposures at last sexual episode associated with non-gonococcal urethritis among STD clinic patients. Sex Transm Infect. 2019 05; 95(3):212-218. PMID: 30181326.
      View in: PubMed
    39. Stoner MCD, Edwards JK, Miller WC, Aiello AE, Halpern CT, Julien A, Rucinski KB, Selin A, Twine R, Hughes JP, Wang J, Agyei Y, Gómez-Olivé FX, Wagner RG, Laeyendecker O, Macphail C, Kahn K, Pettifor A. Does Partner Selection Mediate the Relationship Between School Attendance and HIV/Herpes Simplex Virus-2 Among Adolescent Girls and Young Women in South Africa: An Analysis of HIV Prevention Trials Network 068 Data. . 2018 09 01; 79(1):20-27. PMID: 29847479.
      View in: PubMed
    40. Kilburn K, Ranganathan M, Stoner MCD, Hughes JP, MacPhail C, Agyei Y, Gómez-Olivé FX, Kahn K, Pettifor A. Transactional sex and incident HIV infection in a cohort of young women from rural South Africa. AIDS. 2018 07 31; 32(12):1669-1677. PMID: 29762176.
      View in: PubMed
    41. Hood JE, Bradley H, Hughes JP, Golden MR, Crane HM, Buskin SE, Burkholder GA, Geng E, Kitahata MM, Mathews WC, Moore RD, Hawes SE. Reconciling the evaluation of co-morbidities among HIV care patients in two large data systems: the Medical Monitoring Project and CFAR Network of Integrated Clinical Systems. AIDS Care. 2018 12; 30(12):1551-1559. PMID: 30051719.
      View in: PubMed
    42. Sivay MV, Hudelson SE, Wang J, Agyei Y, Hamilton EL, Selin A, Dennis A, Kahn K, Gomez-Olive FX, MacPhail C, Hughes JP, Pettifor A, Eshleman SH, Grabowski MK. HIV-1 diversity among young women in rural South Africa: HPTN 068. PLoS One. 2018; 13(7):e0198999. PMID: 29975689.
      View in: PubMed
    43. Montgomery BEE, Frew PM, Hughes JP, Wang J, Adimora AA, Haley DF, Kuo I, Jennings L, El-Bassel N, Hodder SL. HIV Risk Characteristics Associated with Violence Against Women: A Longitudinal Study Among Women in the United States. J Womens Health (Larchmt). 2018 11; 27(11):1317-1326. PMID: 29905502.
      View in: PubMed
    44. Grant RM, Mannheimer S, Hughes JP, Hirsch-Moverman Y, Loquere A, Chitwarakorn A, Curlin ME, Li M, Amico KR, Hendrix CW, Anderson PL, Dye BJ, Marzinke MA, Piwowar-Manning E, McKinstry L, Elharrar V, Stirratt M, Rooney JF, Eshleman SH, McNicholl JM, van Griensven F, Holtz TH. Daily and Nondaily Oral Preexposure Prophylaxis in Men and Transgender Women Who Have Sex With Men: The Human Immunodeficiency Virus Prevention Trials Network 067/ADAPT Study. Clin Infect Dis. 2018 05 17; 66(11):1712-1721. PMID: 29420695.
      View in: PubMed
    45. Figueroa DB, Tillotson J, Li M, Piwowar-Manning E, Hendrix CW, Holtz TH, Bokoch K, Bekker LG, van Griensven F, Mannheimer S, Hughes JP, Grant RM, Bumpus NN. Discovery of genetic variants of the kinases that activate tenofovir among individuals in the United States, Thailand, and South Africa: HPTN067. PLoS One. 2018; 13(4):e0195764. PMID: 29641561.
      View in: PubMed
    46. Rosenberg M, Pettifor A, Duta M, Demeyere N, Wagner RG, Selin A, MacPhail C, Laeyendecker O, Hughes JP, Stein A, Tollman S, Kahn K. Executive function associated with sexual risk in young South African women: Findings from the HPTN 068 cohort. PLoS One. 2018; 13(4):e0195217. PMID: 29608615.
      View in: PubMed
    47. Mitchell KM, Dimitrov D, Hughes JP, Xia F, Donnell D, Amico KR, Bokoch K, Chitwarakorn A, Bekker LG, Holtz TH, Mannheimer S, Grant RM, Boily MC. In what circumstances could nondaily preexposure prophylaxis for HIV substantially reduce program costs? AIDS. 2018 03 27; 32(6):809-818. PMID: 29424774.
      View in: PubMed
    48. Rosenberg M, Pettifor A, Twine R, Hughes JP, Gomez-Olive FX, Wagner RG, Sulaimon A, Tollman S, Selin A, MacPhail C, Kahn K. Evidence for sample selection effect and Hawthorne effect in behavioural HIV prevention trial among young women in a rural South African community. BMJ Open. 2018 01 10; 8(1):e019167. PMID: 29326192.
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    49. Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M. Simulations for designing and interpreting intervention trials in infectious diseases. BMC Med. 2017 12 29; 15(1):223. PMID: 29287587.
      View in: PubMed
    50. Bekker LG, Roux S, Sebastien E, Yola N, Amico KR, Hughes JP, Marzinke MA, Hendrix CW, Anderson PL, Elharrar V, Stirratt M, Rooney JF, Piwowar-Manning E, Eshleman SH, McKinstry L, Li M, Dye BJ, Grant RM. Daily and non-daily pre-exposure prophylaxis in African women (HPTN 067/ADAPT Cape Town Trial): a randomised, open-label, phase 2 trial. Lancet HIV. 2018 02; 5(2):e68-e78. PMID: 28986029.
      View in: PubMed
    51. Khosropour CM, Dombrowski JC, Hughes JP, Manhart LE, Simoni JM, Golden MR. Operationalizing the Measurement of Seroadaptive Behaviors: A Comparison of Reported Sexual Behaviors and Purposely-Adopted Behaviors Among Men who have Sex with Men (MSM) in Seattle. AIDS Behav. 2017 Oct; 21(10):2935-2944. PMID: 28097616.
      View in: PubMed
    52. Stoner MCD, Pettifor A, Edwards JK, Aiello AE, Halpern CT, Julien A, Selin A, Twine R, Hughes JP, Wang J, Agyei Y, Gomez-Olive FX, Wagner RG, MacPhail C, Kahn K. The effect of school attendance and school dropout on incident HIV and HSV-2 among young women in rural South Africa enrolled in HPTN 068. AIDS. 2017 09 24; 31(15):2127-2134. PMID: 28692544.
      View in: PubMed
    53. Ma S, Stern JE, Feng Q, Hughes JP, Hawes SE, Winer RL. Incidence and risk factors for human papillomavirus infections in young female online daters. J Med Virol. 2017 11; 89(11):2029-2036. PMID: 28667755.
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    54. Sivay MV, Li M, Piwowar-Manning E, Zhang Y, Hudelson SE, Marzinke MA, Amico RK, Redd A, Hendrix CW, Anderson PL, Bokoch K, Bekker LG, van Griensven F, Mannheimer S, Hughes JP, Grant R, Eshleman SH. Characterization of HIV Seroconverters in a TDF/FTC PrEP Study: HPTN 067/ADAPT. . 2017 07 01; 75(3):271-279. PMID: 28328548.
      View in: PubMed
    55. Lyons VH, Li L, Hughes JP, Rowhani-Rahbar A. Proposed variations of the stepped-wedge design can be used to accommodate multiple interventions. J Clin Epidemiol. 2017 Jun; 86:160-167. PMID: 28412466.
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    56. Hood JE, Golden MR, Hughes JP, Goodreau SM, Siddiqi AE, Buskin SE, Hawes SE. Projected demographic composition of the United States population of people living with diagnosed HIV. AIDS Care. 2017 12; 29(12):1543-1550. PMID: 28395528.
      View in: PubMed
    57. Fu Xi L, Schiffman M, Ke Y, Hughes JP, Galloway DA, He Z, Hulbert A, Winer RL, Koutsky LA, Kiviat NB. Type-dependent association between risk of cervical intraepithelial neoplasia and viral load of oncogenic human papillomavirus types other than types 16 and 18. Int J Cancer. 2017 04 15; 140(8):1747-1756. PMID: 28052328.
      View in: PubMed
    58. Eshleman SH, Hudelson SE, Redd AD, Swanstrom R, Ou SS, Zhang XC, Ping LH, Piwowar-Manning E, Porcella SF, Sievers MF, Martens CA, Bruno D, Dukhovlinova E, McCauley M, Gamble T, Fogel JM, Sabin D, Quinn TC, Gunde L, Maliwichi M, Nhando N, Akelo V, Moyo S, Panchia R, Kumarasamy N, Chotirosniramit N, Melo MG, Pilotto J, Grinsztejn B, Mayer K, Chen YQ, Hughes JP, Cohen MS. Treatment as Prevention: Characterization of Partner Infections in the HIV Prevention Trials Network 052 Trial. . 2017 Jan 01; 74(1):112-116. PMID: 27532476.
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    59. Wagner AD, Mugo C, Njuguna IN, Maleche-Obimbo E, Sherr K, Inwani IW, Hughes JP, Wamalwa DC, John-Stewart GC, Slyker JA. Implementation and Operational Research: Active Referral of Children of HIV-Positive Adults Reveals High Prevalence of Undiagnosed HIV. . 2016 Dec 15; 73(5):e83-e89. PMID: 27846074.
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    60. Ásbjörnsdóttir KH, Hughes JP, Wamalwa D, Langat A, Slyker JA, Okinyi HM, Overbaugh J, Benki-Nugent S, Tapia K, Maleche-Obimbo E, Rowhani-Rahbar A, John-Stewart G. Differences in virologic and immunologic response to antiretroviral therapy among HIV-1-infected infants and children. AIDS. 2016 11 28; 30(18):2835-2843. PMID: 27603293.
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    61. Pettifor A, MacPhail C, Hughes JP, Selin A, Wang J, Gómez-Olivé FX, Eshleman SH, Wagner RG, Mabuza W, Khoza N, Suchindran C, Mokoena I, Twine R, Andrew P, Townley E, Laeyendecker O, Agyei Y, Tollman S, Kahn K. The effect of a conditional cash transfer on HIV incidence in young women in rural South Africa (HPTN 068): a phase 3, randomised controlled trial. Lancet Glob Health. 2016 12; 4(12):e978-e988. PMID: 27815148.
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    62. Safren SA, Hughes JP, Mimiaga MJ, Moore AT, Friedman RK, Srithanaviboonchai K, Limbada M, Williamson BD, Elharrar V, Cummings V, Magidson JF, Gaydos CA, Celentano DD, Mayer KH. Frequency and predictors of estimated HIV transmissions and bacterial STI acquisition among HIV-positive patients in HIV care across three continents. J Int AIDS Soc. 2016; 19(1):21096. PMID: 27687145.
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    63. Pettifor A, MacPhail C, Selin A, Gómez-Olivé FX, Rosenberg M, Wagner RG, Mabuza W, Hughes JP, Suchindran C, Piwowar-Manning E, Wang J, Twine R, Daniel T, Andrew P, Laeyendecker O, Agyei Y, Tollman S, Kahn K. HPTN 068: A Randomized Control Trial of a Conditional Cash Transfer to Reduce HIV Infection in Young Women in South Africa-Study Design and Baseline Results. AIDS Behav. 2016 09; 20(9):1863-82. PMID: 26891839.
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    64. Hughes JP, Emel L, Hanscom B, Zangeneh S. Design Issues in Transgender Studies. . 2016 08 15; 72 Suppl 3:S248-51. PMID: 27429191.
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    65. Ranganathan M, Heise L, Pettifor A, Silverwood RJ, Selin A, MacPhail C, Delany-Moretlwe S, Kahn K, Gómez-Olivé FX, Hughes JP, Piwowar-Manning E, Laeyendecker O, Watts C. Transactional sex among young women in rural South Africa: prevalence, mediators and association with HIV infection. J Int AIDS Soc. 2016; 19(1):20749. PMID: 27469061.
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    66. Khosropour CM, Dombrowski JC, Swanson F, Kerani RP, Katz DA, Barbee LA, Hughes JP, Manhart LE, Golden MR. Trends in Serosorting and the Association With HIV/STI Risk Over Time Among Men Who Have Sex With Men. . 2016 06 01; 72(2):189-97. PMID: 26885806.
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    67. Colombara DV, Manhart LE, Carter JJ, Hawes SE, Weiss NS, Hughes JP, Qiao YL, Taylor PR, Smith JS, Galloway DA. Absence of an association of human polyomavirus and papillomavirus infection with lung cancer in China: a nested case-control study. BMC Cancer. 2016 06 01; 16:342. PMID: 27246610.
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    68. Xi LF, Schiffman M, Koutsky LA, Hughes JP, Hulbert A, Shen Z, Galloway DA, Kiviat NB. Variant-specific persistence of infections with human papillomavirus Types 31, 33, 45, 56 and 58 and risk of cervical intraepithelial neoplasia. Int J Cancer. 2016 09 01; 139(5):1098-105. PMID: 27121353.
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    69. Ying R, Sharma M, Celum C, Baeten JM, van Rooyen H, Hughes JP, Garnett G, Barnabas RV. Home testing and counselling to reduce HIV incidence in a generalised epidemic setting: a mathematical modelling analysis. Lancet HIV. 2016 06; 3(6):e275-82. PMID: 27240790.
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    70. Magidson JF, Li X, Mimiaga MJ, Moore AT, Srithanaviboonchai K, Friedman RK, Limbada M, Hughes JP, Cummings V, Gaydos CA, Elharrar V, Celentano D, Mayer KH, Safren SA. Antiretroviral Medication Adherence and Amplified HIV Transmission Risk Among Sexually Active HIV-Infected Individuals in Three Diverse International Settings. AIDS Behav. 2016 Apr; 20(4):699-709. PMID: 26246068.
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    71. Barnabas RV, van Rooyen H, Tumwesigye E, Brantley J, Baeten JM, van Heerden A, Turyamureeba B, Joseph P, Krows M, Thomas KK, Schaafsma TT, Hughes JP, Celum C. Uptake of antiretroviral therapy and male circumcision after community-based HIV testing and strategies for linkage to care versus standard clinic referral: a multisite, open-label, randomised controlled trial in South Africa and Uganda. Lancet HIV. 2016 05; 3(5):e212-20. PMID: 27126488.
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    72. Xu DR, Gong W, Caine ED, Xiao S, Hughes JP, Ng M, Simoni J, He H, Smith KL, Brown HS, Gloyd S. Lay health supporters aided by a mobile phone messaging system to improve care of villagers with schizophrenia in Liuyang, China: protocol for a randomised control trial. BMJ Open. 2016 Jan 20; 6(1):e010120. PMID: 26792221.
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    73. Fu TC, Hughes JP, Feng Q, Hulbert A, Hawes SE, Xi LF, Schwartz SM, Stern JE, Koutsky LA, Winer RL. Epidemiology of Human Papillomavirus Detected in the Oral Cavity and Fingernails of Mid-Adult Women. Sex Transm Dis. 2015 Dec; 42(12):677-85. PMID: 26562696.
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    74. Magaret AS, Mujugira A, Hughes JP, Lingappa J, Bukusi EA, DeBruyn G, Delany-Moretlwe S, Fife KH, Gray GE, Kapiga S, Karita E, Mugo NR, Rees H, Ronald A, Vwalika B, Were E, Celum C, Wald A. Effect of Condom Use on Per-act HSV-2 Transmission Risk in HIV-1, HSV-2-discordant Couples. Clin Infect Dis. 2016 Feb 15; 62(4):456-61. PMID: 26578538.
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    75. Wilson KS, Deya R, Masese L, Simoni JM, Stoep AV, Shafi J, Jaoko W, Hughes JP, McClelland RS. Prevalence and correlates of intimate partner violence in HIV-positive women engaged in transactional sex in Mombasa, Kenya. Int J STD AIDS. 2016 11; 27(13):1194-1203. PMID: 26464502.
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    76. Chen I, Clarke W, Ou SS, Marzinke MA, Breaud A, Emel LM, Wang J, Hughes JP, Richardson P, Haley DF, Lucas J, Rompalo A, Justman JE, Hodder SL, Eshleman SH. Antiretroviral Drug Use in a Cohort of HIV-Uninfected Women in the United States: HIV Prevention Trials Network 064. PLoS One. 2015; 10(10):e0140074. PMID: 26445283.
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    77. Colombara DV, Manhart LE, Carter JJ, Hawes SE, Weiss NS, Hughes JP, Barnett MJ, Goodman GE, Smith JS, Qiao YL, Galloway DA. Prior human polyomavirus and papillomavirus infection and incident lung cancer: a nested case-control study. Cancer Causes Control. 2015 Dec; 26(12):1835-44. PMID: 26415892.
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    78. Wagenaar BH, Cumbe V, Raunig-Berhó M, Rao D, Napúa M, Hughes JP, Sherr K. Health facility determinants and trends of ICD-10 outpatient psychiatric consultations across Sofala, Mozambique: time-series analyses from 2012 to 2014. BMC Psychiatry. 2015 Sep 23; 15:227. PMID: 26399237.
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    79. Barrere A, Stern JE, Feng Q, Hughes JP, Winer RL. Oncogenic Human Papillomavirus Infections in 18- to 24-Year-Old Female Online Daters. Sex Transm Dis. 2015 Sep; 42(9):492-7. PMID: 26267875.
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    80. Hughes JP, Granston TS, Heagerty PJ. Current issues in the design and analysis of stepped wedge trials. Contemp Clin Trials. 2015 Nov; 45(Pt A):55-60. PMID: 26247569.
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    81. Colombara DV, Hughes JP, Burnett-Hartman AN, Hawes SE, Galloway DA, Schwartz SM, Bostick RM, Potter JD, Manhart LE. Analysis of liquid bead microarray antibody assay data for epidemiologic studies of pathogen-cancer associations. J Immunol Methods. 2015 Oct; 425:45-50. PMID: 26071614.
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    82. Barnabas RV, Baeten JM, Lingappa JR, Thomas KK, Hughes JP, Mugo NR, Delany-Moretlwe S, Gray G, Rees H, Mujugira A, Ronald A, Stevens W, Kapiga S, Wald A, Celum C. Acyclovir Prophylaxis Reduces the Incidence of Herpes Zoster Among HIV-Infected Individuals: Results of a Randomized Clinical Trial. J Infect Dis. 2016 Feb 15; 213(4):551-5. PMID: 26142452.
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    83. Rosenberg M, Pettifor A, Van Rie A, Thirumurthy H, Emch M, Miller WC, Gómez-Olivé FX, Twine R, Hughes JP, Laeyendecker O, Selin A, Kahn K. The Relationship between Alcohol Outlets, HIV Risk Behavior, and HSV-2 Infection among South African Young Women: A Cross-Sectional Study. PLoS One. 2015; 10(5):e0125510. PMID: 25954812.
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    84. Rosenberg M, Pettifor A, Lippman SA, Thirumurthy H, Emch M, Miller WC, Selin A, Gómez-Olivé FX, Hughes JP, Laeyendecker O, Tollman S, Kahn K. Relationship between community-level alcohol outlet accessibility and individual-level herpes simplex virus type 2 infection among young women in South Africa. Sex Transm Dis. 2015 May; 42(5):259-65. PMID: 25868138.
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    85. Hughes JP, Haley DF, Frew PM, Golin CE, Adimora AA, Kuo I, Justman J, Soto-Torres L, Wang J, Hodder S. Regression to the mean and changes in risk behavior following study enrollment in a cohort of U.S. women at risk for HIV. Ann Epidemiol. 2015 Jun; 25(6):439-44. PMID: 25883065.
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    86. Golden MR, Kerani RP, Stenger M, Hughes JP, Aubin M, Malinski C, Holmes KK. Uptake and population-level impact of expedited partner therapy (EPT) on Chlamydia trachomatis and Neisseria gonorrhoeae: the Washington State community-level randomized trial of EPT. PLoS Med. 2015 Jan; 12(1):e1001777. PMID: 25590331.
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    87. Mackelprang RD, Carrington M, Thomas KK, Hughes JP, Baeten JM, Wald A, Farquhar C, Fife K, Campbell MS, Kapiga S, Gao X, Mullins JI, Lingappa JR. Host genetic and viral determinants of HIV-1 RNA set point among HIV-1 seroconverters from sub-saharan Africa. J Virol. 2015 Feb; 89(4):2104-11. PMID: 25473042.
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    88. Barnabas RV, van Rooyen H, Tumwesigye E, Murnane PM, Baeten JM, Humphries H, Turyamureeba B, Joseph P, Krows M, Hughes JP, Celum C. Initiation of antiretroviral therapy and viral suppression after home HIV testing and counselling in KwaZulu-Natal, South Africa, and Mbarara district, Uganda: a prospective, observational intervention study. Lancet HIV. 2014 Nov; 1(2):e68-e76. PMID: 25601912.
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    89. Xi LF, Schiffman M, Koutsky LA, Hughes JP, Winer RL, Mao C, Hulbert A, Lee SK, Shen Z, Kiviat NB. Lineages of oncogenic human papillomavirus types other than type 16 and 18 and risk for cervical intraepithelial neoplasia. J Natl Cancer Inst. 2014 Oct; 106(10). PMID: 25217779.
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    90. Hanisch RA, Cherne SL, Sow PS, Winer RL, Hughes JP, Feng Q, Gottlieb GS, Toure M, Dem A, Kiviat NB, Hawes SE. Human papillomavirus type 16 viral load in relation to HIV infection, cervical neoplasia and cancer in Senegal. Cancer Epidemiol. 2014 Aug; 38(4):369-75. PMID: 24852136.
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    91. Haley DF, Golin C, El-Sadr W, Hughes JP, Wang J, Roman Isler M, Mannheimer S, Kuo I, Lucas J, DiNenno E, Justman J, Frew PM, Emel L, Rompalo A, Polk S, Adimora AA, Rodriquez L, Soto-Torres L, Hodder S. Venue-based recruitment of women at elevated risk for HIV: an HIV Prevention Trials Network study. J Womens Health (Larchmt). 2014 Jun; 23(6):541-51. PMID: 24742266.
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    92. Haley DF, Lucas J, Golin CE, Wang J, Hughes JP, Emel L, El-Sadr W, Frew PM, Justman J, Adimora AA, Watson CC, Mannheimer S, Rompalo A, Soto-Torres L, Tims-Cook Z, Carter Y, Hodder SL. Retention strategies and factors associated with missed visits among low income women at increased risk of HIV acquisition in the US (HPTN 064). AIDS Patient Care STDS. 2014 Apr; 28(4):206-17. PMID: 24697160.
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    93. Adimora AA, Hughes JP, Wang J, Haley DF, Golin CE, Magnus M, Rompalo A, Justman J, del Rio C, El-Sadr W, Mannheimer S, Soto-Torres L, Hodder SL. Characteristics of multiple and concurrent partnerships among women at high risk for HIV infection. . 2014 Jan 01; 65(1):99-106. PMID: 24056163.
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    94. Baisley K, Baeten JM, Hughes JP, Donnell DJ, Wang J, Hayes R, Watson Jones D, Celum C. Summary measures of adherence using pill counts in two HIV prevention trials: the need for standardisation in reporting. AIDS Behav. 2013 Nov; 17(9):3108-19. PMID: 23801018.
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    95. Donnell D, Hughes JP, Wang L, Chen YQ, Fleming TR. Study design considerations for evaluating efficacy of systemic preexposure prophylaxis interventions. . 2013 Jul; 63 Suppl 2:S130-4. PMID: 23764624.
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    96. Celum C, Baeten JM, Hughes JP, Barnabas R, Liu A, Van Rooyen H, Buchbinder S. Integrated strategies for combination HIV prevention: principles and examples for men who have sex with men in the Americas and heterosexual African populations. . 2013 Jul; 63 Suppl 2:S213-20. PMID: 23764638.
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    97. Kahle EM, Hughes JP, Lingappa JR, John-Stewart G, Celum C, Nakku-Joloba E, Njuguna S, Mugo N, Bukusi E, Manongi R, Baeten JM. An empiric risk scoring tool for identifying high-risk heterosexual HIV-1-serodiscordant couples for targeted HIV-1 prevention. . 2013 Mar 01; 62(3):339-47. PMID: 23187945.
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    98. Dai JY, Gilbert PB, Hughes JP, Brown ER. Estimating the efficacy of preexposure prophylaxis for HIV prevention among participants with a threshold level of drug concentration. Am J Epidemiol. 2013 Feb 01; 177(3):256-63. PMID: 23302152.
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    99. Hodder SL, Justman J, Hughes JP, Wang J, Haley DF, Adimora AA, Del Rio C, Golin CE, Kuo I, Rompalo A, Soto-Torres L, Mannheimer SB, Johnson-Lewis L, Eshleman SH, El-Sadr WM. HIV acquisition among women from selected areas of the United States: a cohort study. Ann Intern Med. 2013 Jan 01; 158(1):10-8. PMID: 23277896.
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    100. Lingappa JR, Thomas KK, Hughes JP, Baeten JM, Wald A, Farquhar C, de Bruyn G, Fife KH, Campbell MS, Kapiga S, Mullins JI, Celum C. Partner characteristics predicting HIV-1 set point in sexually acquired HIV-1 among African seroconverters. AIDS Res Hum Retroviruses. 2013 Jan; 29(1):164-71. PMID: 23061422.
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    101. Manhart LE, Gillespie CW, Lowens MS, Khosropour CM, Colombara DV, Golden MR, Hakhu NR, Thomas KK, Hughes JP, Jensen NL, Totten PA. Standard treatment regimens for nongonococcal urethritis have similar but declining cure rates: a randomized controlled trial. Clin Infect Dis. 2013 Apr; 56(7):934-42. PMID: 23223595.
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    102. Murnane PM, Hughes JP, Celum C, Lingappa JR, Mugo N, Farquhar C, Kiarie J, Wald A, Baeten JM. Using plasma viral load to guide antiretroviral therapy initiation to prevent HIV-1 transmission. PLoS One. 2012; 7(11):e51192. PMID: 23250272.
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    103. Eshleman SH, Hughes JP, Laeyendecker O, Wang J, Brookmeyer R, Johnson-Lewis L, Mullis CE, Hackett J, Vallari AS, Justman J, Hodder S. Use of a multifaceted approach to analyze HIV incidence in a cohort study of women in the United States: HIV Prevention Trials Network 064 Study. J Infect Dis. 2013 Jan 15; 207(2):223-31. PMID: 23129758.
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    104. Winer RL, Hughes JP, Feng Q, Xi LF, Lee SK, O'Reilly SF, Kiviat NB, Koutsky LA. Prevalence and risk factors for oncogenic human papillomavirus infections in high-risk mid-adult women. Sex Transm Dis. 2012 Nov; 39(11):848-56. PMID: 23064533.
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    105. Edelstein ZR, Schwartz SM, Hawes S, Hughes JP, Feng Q, Stern ME, O'Reilly S, Lee SK, Fu Xi L, Koutsky LA. Rates and determinants of oral human papillomavirus infection in young men. Sex Transm Dis. 2012 Nov; 39(11):860-7. PMID: 23064535.
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    106. Wolfrum SG, Koutsky LA, Hughes JP, Feng Q, Xi LF, Shen Z, Winer RL. Evaluation of dry and wet transport of at-home self-collected vaginal swabs for human papillomavirus testing. J Med Microbiol. 2012 Nov; 61(Pt 11):1538-1545. PMID: 22899778.
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    107. Cárcamo CP, Campos PE, García PJ, Hughes JP, Garnett GP, Holmes KK. Prevalences of sexually transmitted infections in young adults and female sex workers in Peru: a national population-based survey. Lancet Infect Dis. 2012 Oct; 12(10):765-73. PMID: 22878023.
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    108. Dai JY, Hughes JP. A unified procedure for meta-analytic evaluation of surrogate end points in randomized clinical trials. Biostatistics. 2012 Sep; 13(4):609-24. PMID: 22394448.
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    109. Lu Y, Celum C, Wald A, Baeten JM, Cowan F, Delany-Moretlwe S, Reid SE, Hughes JP, Wilcox E, Corey L, Hendrix CW. Acyclovir achieves a lower concentration in African HIV-seronegative, herpes simplex virus 2-seropositive women than in non-African populations. Antimicrob Agents Chemother. 2012 May; 56(5):2777-9. PMID: 22330926.
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    110. Hughes JP, Baeten JM, Lingappa JR, Magaret AS, Wald A, de Bruyn G, Kiarie J, Inambao M, Kilembe W, Farquhar C, Celum C. Determinants of per-coital-act HIV-1 infectivity among African HIV-1-serodiscordant couples. J Infect Dis. 2012 Feb 01; 205(3):358-65. PMID: 22241800.
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    111. Rowhani-Rahbar A, Alvarez FB, Bryan JT, Hughes JP, Hawes SE, Weiss NS, Koutsky LA. Evidence of immune memory 8.5 years following administration of a prophylactic human papillomavirus type 16 vaccine. J Clin Virol. 2012 Mar; 53(3):239-43. PMID: 22209292.
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    112. Vanbuskirk K, Winer RL, Hughes JP, Feng Q, Arima Y, Lee SK, Stern ME, O'Reilly SF, Koutsky LA. Circumcision and acquisition of human papillomavirus infection in young men. Sex Transm Dis. 2011 Nov; 38(11):1074-81. PMID: 21992987.
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    113. Eshleman SH, Hudelson SE, Redd AD, Wang L, Debes R, Chen YQ, Martens CA, Ricklefs SM, Selig EJ, Porcella SF, Munshaw S, Ray SC, Piwowar-Manning E, McCauley M, Hosseinipour MC, Kumwenda J, Hakim JG, Chariyalertsak S, de Bruyn G, Grinsztejn B, Kumarasamy N, Makhema J, Mayer KH, Pilotto J, Santos BR, Quinn TC, Cohen MS, Hughes JP. Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial. J Infect Dis. 2011 Dec 15; 204(12):1918-26. PMID: 21990420.
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    114. Xi LF, Hughes JP, Castle PE, Edelstein ZR, Wang C, Galloway DA, Koutsky LA, Kiviat NB, Schiffman M. Viral load in the natural history of human papillomavirus type 16 infection: a nested case-control study. J Infect Dis. 2011 May 15; 203(10):1425-33. PMID: 21415020.
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    115. Sánchez J, Sal Y Rosas VG, Hughes JP, Baeten JM, Fuchs J, Buchbinder SP, Koblin BA, Casapia M, Ortiz A, Celum C. Male circumcision and risk of HIV acquisition among MSM. AIDS. 2011 Feb 20; 25(4):519-23. PMID: 21099672.
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    116. Mullins JI, Heath L, Hughes JP, Kicha J, Styrchak S, Wong KG, Rao U, Hansen A, Harris KS, Laurent JP, Li D, Simpson JH, Essigmann JM, Loeb LA, Parkins J. Mutation of HIV-1 genomes in a clinical population treated with the mutagenic nucleoside KP1461. PLoS One. 2011 Jan 14; 6(1):e15135. PMID: 21264288.
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    117. Winer RL, Hughes JP, Feng Q, Xi LF, Cherne S, O'Reilly S, Kiviat NB, Koutsky LA. Early natural history of incident, type-specific human papillomavirus infections in newly sexually active young women. Cancer Epidemiol Biomarkers Prev. 2011 Apr; 20(4):699-707. PMID: 21173170.
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    118. Donnell D, Hughes JP, Fleming TR. Challenges in the design of HIV prevention trials in the United States. . 2010 Dec; 55 Suppl 2:S136-40. PMID: 21406984.
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    119. Arima Y, Winer RL, Feng Q, Hughes JP, Lee SK, Stern ME, O'Reilly SF, Koutsky LA. Development of genital warts after incident detection of human papillomavirus infection in young men. J Infect Dis. 2010 Oct 15; 202(8):1181-4. PMID: 20812849.
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    120. Lingappa JR, Hughes JP, Wang RS, Baeten JM, Celum C, Gray GE, Stevens WS, Donnell D, Campbell MS, Farquhar C, Essex M, Mullins JI, Coombs RW, Rees H, Corey L, Wald A. Estimating the impact of plasma HIV-1 RNA reductions on heterosexual HIV-1 transmission risk. PLoS One. 2010 Sep 13; 5(9):e12598. PMID: 20856886.
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    121. Balasubramanian A, Kulasingam SL, Baer A, Hughes JP, Myers ER, Mao C, Kiviat NB, Koutsky LA. Accuracy and cost-effectiveness of cervical cancer screening by high-risk human papillomavirus DNA testing of self-collected vaginal samples. J Low Genit Tract Dis. 2010 Jul; 14(3):185-95. PMID: 20592553.
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    122. Lingappa JR, Baeten JM, Wald A, Hughes JP, Thomas KK, Mujugira A, Mugo N, Bukusi EA, Cohen CR, Katabira E, Ronald A, Kiarie J, Farquhar C, Stewart GJ, Makhema J, Essex M, Were E, Fife KH, de Bruyn G, Gray GE, McIntyre JA, Manongi R, Kapiga S, Coetzee D, Allen S, Inambao M, Kayitenkore K, Karita E, Kanweka W, Delany S, Rees H, Vwalika B, Magaret AS, Wang RS, Kidoguchi L, Barnes L, Ridzon R, Corey L, Celum C. Daily acyclovir for HIV-1 disease progression in people dually infected with HIV-1 and herpes simplex virus type 2: a randomised placebo-controlled trial. Lancet. 2010 Mar 06; 375(9717):824-33. PMID: 20153888.
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    123. Nelson SJ, Hughes JP, Foxman B, Aral SO, Holmes KK, White PJ, Golden MR. Age- and gender-specific estimates of partnership formation and dissolution rates in the Seattle sex survey. Ann Epidemiol. 2010 Apr; 20(4):308-17. PMID: 20071193.
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    124. Sherr KH, Micek MA, Gimbel SO, Gloyd SS, Hughes JP, John-Stewart GC, Manjate RM, Pfeiffer J, Weiss NS. Quality of HIV care provided by non-physician clinicians and physicians in Mozambique: a retrospective cohort study. AIDS. 2010 Jan; 24 Suppl 1:S59-66. PMID: 20023441.
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    125. Xi LF, Hughes JP, Edelstein ZR, Kiviat NB, Koutsky LA, Mao C, Ho J, Schiffman M. Human Papillomavirus (HPV) type 16 and type 18 DNA Loads at Baseline and Persistence of Type-Specific Infection during a 2-year follow-up. J Infect Dis. 2009 Dec 01; 200(11):1789-97. PMID: 19848609.
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    126. Rowhani-Rahbar A, Carter JJ, Hawes SE, Hughes JP, Weiss NS, Galloway DA, Koutsky LA. Antibody responses in oral fluid after administration of prophylactic human papillomavirus vaccines. J Infect Dis. 2009 Nov 01; 200(9):1452-5. PMID: 19698077.
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    127. Menza TW, Hughes JP, Celum CL, Golden MR. Prediction of HIV acquisition among men who have sex with men. Sex Transm Dis. 2009 Sep; 36(9):547-55. PMID: 19707108.
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    128. Rowhani-Rahbar A, Mao C, Hughes JP, Alvarez FB, Bryan JT, Hawes SE, Weiss NS, Koutsky LA. Longer term efficacy of a prophylactic monovalent human papillomavirus type 16 vaccine. Vaccine. 2009 Sep 18; 27(41):5612-9. PMID: 19647066.
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    129. Winer RL, Harris TG, Xi LF, Jansen KU, Hughes JP, Feng Q, Welebob C, Ho J, Lee SK, Carter JJ, Galloway DA, Kiviat NB, Koutsky LA. Quantitative human papillomavirus 16 and 18 levels in incident infections and cervical lesion development. J Med Virol. 2009 Apr; 81(4):713-21. PMID: 19235870.
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    130. Rowhani-Rahbar A, Hughes JP, Koutsky LA. Difficulties in estimating the male-to-female sexual transmissibility of human papillomavirus infection. Sex Transm Dis. 2009 Apr; 36(4):261-3. PMID: 19077921.
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    131. Winer RL, Hughes JP, Feng Q, O'Reilly S, Kiviat NB, Koutsky LA. Comparison of incident cervical and vulvar/vaginal human papillomavirus infections in newly sexually active young women. J Infect Dis. 2009 Mar 15; 199(6):815-8. PMID: 19434913.
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    132. Helms DJ, Weinstock HS, Mahle KC, Bernstein KT, Furness BW, Kent CK, Rietmeijer CA, Shahkolahi AM, Hughes JP, Golden MR. HIV testing frequency among men who have sex with men attending sexually transmitted disease clinics: implications for HIV prevention and surveillance. . 2009 Mar 01; 50(3):320-6. PMID: 19194309.
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    133. Baseman JG, Kulasingam SL, Harris TG, Hughes JP, Kiviat NB, Mao C, Koutsky LA. Evaluation of primary cervical cancer screening with an oncogenic human papillomavirus DNA test and cervical cytologic findings among women who attended family planning clinics in the United States. Am J Obstet Gynecol. 2008 Jul; 199(1):26.e1-8. PMID: 18313636.
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    134. Moore EE, Hawes SE, Scholes D, Boyko EJ, Hughes JP, Fihn SD. Sexual intercourse and risk of symptomatic urinary tract infection in post-menopausal women. J Gen Intern Med. 2008 May; 23(5):595-9. PMID: 18266044.
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    135. Winer RL, Feng Q, Hughes JP, O'Reilly S, Kiviat NB, Koutsky LA. Risk of female human papillomavirus acquisition associated with first male sex partner. J Infect Dis. 2008 Jan 15; 197(2):279-82. PMID: 18179386.
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    136. Partridge JM, Hughes JP, Feng Q, Winer RL, Weaver BA, Xi LF, Stern ME, Lee SK, O'Reilly SF, Hawes SE, Kiviat NB, Koutsky LA. Genital human papillomavirus infection in men: incidence and risk factors in a cohort of university students. J Infect Dis. 2007 Oct 15; 196(8):1128-36. PMID: 17955430.
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    137. Winer RL, Feng Q, Hughes JP, Yu M, Kiviat NB, O'Reilly S, Koutsky LA. Concordance of self-collected and clinician-collected swab samples for detecting human papillomavirus DNA in women 18 to 32 years of age. Sex Transm Dis. 2007 Jun; 34(6):371-7. PMID: 17065848.
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    138. Manhart LE, Holmes KK, Hughes JP, Houston LS, Totten PA. Mycoplasma genitalium among young adults in the United States: an emerging sexually transmitted infection. Am J Public Health. 2007 Jun; 97(6):1118-25. PMID: 17463380.
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    139. Sanchez J, Lama JR, Kusunoki L, Manrique H, Goicochea P, Lucchetti A, Rouillon M, Pun M, Suarez L, Montano S, Sanchez JL, Tabet S, Hughes JP, Celum C. HIV-1, sexually transmitted infections, and sexual behavior trends among men who have sex with men in Lima, Peru. . 2007 Apr 15; 44(5):578-85. PMID: 17279049.
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    140. Gimbel-Sherr SO, Micek MA, Gimbel-Sherr KH, Koepsell T, Hughes JP, Thomas KK, Pfeiffer J, Gloyd SS. Using nurses to identify HAART eligible patients in the Republic of Mozambique: results of a time series analysis. Hum Resour Health. 2007 Feb 28; 5:7. PMID: 17328804.
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    141. Richardson BA, Hughes JP, Benki S. Statistical methods for determining the accuracy of quantitative polymerase chain reaction-based tests. Stat Med. 2007 Feb 20; 26(4):895-902. PMID: 16685704.
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    142. Hughes JP, Kulich M. Cluster randomized trials for HIV prevention. Curr Opin HIV AIDS. 2006 Nov; 1(6):471-5. PMID: 19372848.
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    143. Hussey MA, Hughes JP. Design and analysis of stepped wedge cluster randomized trials. Contemp Clin Trials. 2007 Feb; 28(2):182-91. PMID: 16829207.
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    144. Winer RL, Hughes JP, Feng Q, O'Reilly S, Kiviat NB, Holmes KK, Koutsky LA. Condom use and the risk of genital human papillomavirus infection in young women. N Engl J Med. 2006 Jun 22; 354(25):2645-54. PMID: 16790697.
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    145. Ou SS, Hughes JP, Richardson BA. Methods for assessing the accuracy of PCR-based tests: comparisons and extensions. Stat Med. 2005 Jun 15; 24(11):1755-64. PMID: 15568209.
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    146. Golden MR, Whittington WL, Handsfield HH, Hughes JP, Stamm WE, Hogben M, Clark A, Malinski C, Helmers JR, Thomas KK, Holmes KK. Effect of expedited treatment of sex partners on recurrent or persistent gonorrhea or chlamydial infection. N Engl J Med. 2005 Feb 17; 352(7):676-85. PMID: 15716561.
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    147. Winer RL, Kiviat NB, Hughes JP, Adam DE, Lee SK, Kuypers JM, Koutsky LA. Development and duration of human papillomavirus lesions, after initial infection. J Infect Dis. 2005 Mar 01; 191(5):731-8. PMID: 15688287.
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    148. Miller L, Thomas K, Hughes JP, Holmes KK, Stout S, Eschenbach DA. Randomised treatment trial of bacterial vaginosis to prevent post-abortion complication. BJOG. 2004 Sep; 111(9):982-8. PMID: 15327614.
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    149. Manhart LE, Aral SO, Holmes KK, Critchlow CW, Hughes JP, Whittington WL, Foxman B. Influence of study population on the identification of risk factors for sexually transmitted diseases using a case-control design: the example of gonorrhea. Am J Epidemiol. 2004 Aug 15; 160(4):393-402. PMID: 15286025.
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    150. Meier AS, Richardson BA, Hughes JP. Discrete proportional hazards models for mismeasured outcomes. Biometrics. 2003 Dec; 59(4):947-54. PMID: 14969473.
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    151. Hughes JP, Totten P. Estimating the accuracy of polymerase chain reaction-based tests using endpoint dilution. Biometrics. 2003 Sep; 59(3):505-11. PMID: 14601751.
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    152. Onda T, Carter JJ, Koutsky LA, Hughes JP, Lee SK, Kuypers J, Kiviat N, Galloway DA. Characterization of IgA response among women with incident HPV 16 infection. Virology. 2003 Jul 20; 312(1):213-21. PMID: 12890634.
      View in: PubMed
    153. Richardson BA, Hughes JP. Modeling breastmilk infectivity in HIV-1 infected mothers. Biometrics. 2003 Mar; 59(1):179-85. PMID: 12762455.
      View in: PubMed
    154. Bureau A, Shiboski S, Hughes JP. Applications of continuous time hidden Markov models to the study of misclassified disease outcomes. Stat Med. 2003 Feb 15; 22(3):441-62. PMID: 12529874.
      View in: PubMed
    155. Richardson BA, John-Stewart GC, Hughes JP, Nduati R, Mbori-Ngacha D, Overbaugh J, Kreiss JK. Breast-milk infectivity in human immunodeficiency virus type 1-infected mothers. J Infect Dis. 2003 Mar 01; 187(5):736-40. PMID: 12599046.
      View in: PubMed
    156. Winer RL, Lee SK, Hughes JP, Adam DE, Kiviat NB, Koutsky LA. Genital human papillomavirus infection: incidence and risk factors in a cohort of female university students. Am J Epidemiol. 2003 Feb 01; 157(3):218-26. PMID: 12543621.
      View in: PubMed
    157. Hughes JP, Garnett GP, Koutsky L. The theoretical population-level impact of a prophylactic human papilloma virus vaccine. Epidemiology. 2002 Nov; 13(6):631-9. PMID: 12410003.
      View in: PubMed
    158. Kulasingam SL, Hughes JP, Kiviat NB, Mao C, Weiss NS, Kuypers JM, Koutsky LA. Evaluation of human papillomavirus testing in primary screening for cervical abnormalities: comparison of sensitivity, specificity, and frequency of referral. JAMA. 2002 Oct 09; 288(14):1749-57. PMID: 12365959.
      View in: PubMed
    159. Drain PK, Holmes KK, Hughes JP, Koutsky LA. Determinants of cervical cancer rates in developing countries. Int J Cancer. 2002 Jul 10; 100(2):199-205. PMID: 12115570.
      View in: PubMed
    160. Xi LF, Carter JJ, Galloway DA, Kuypers J, Hughes JP, Lee SK, Adam DE, Kiviat NB, Koutsky LA. Acquisition and natural history of human papillomavirus type 16 variant infection among a cohort of female university students. Cancer Epidemiol Biomarkers Prev. 2002 Apr; 11(4):343-51. PMID: 11927494.
      View in: PubMed
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