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James P Hughes MD

TitleAssistant Professor
InstitutionUniversity of Massachusetts Medical School
DepartmentOtolaryngology
Address159 Union Street, Suite 102
Marlborough MA 01752
Phone508-752-3439
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    Other Positions
    InstitutionUMMS - School of Medicine
    DepartmentOtolaryngology


    Collapse Biography 
    Collapse education and training
    University of Michigan, Ann Arbor, Ann Arbor, MI, United StatesBSScience
    Clark University, Worcester, MA, United StatesMBABusiness
    Clark University, Worcester, MA, United StatesMHAHealth
    Wayne State University School of Medicine, Detroit, MI, United StatesMD

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Irvin R, Gamble T, Malone J, Wang Z, Wilson E, Hughes JP, Farley J, Mayer KH, Del Rio C, Batey DS, Cummings V, Remien RH, Beyrer C, Thio CL. HPTN 078: High Prevalence of HCV Antibodies Among Urban U.S. Men Who Have Sex with Men (MSM) Independent of HIV Status. Clin Infect Dis. 2020 Dec 21. PMID: 33346798.
      View in: PubMed
    2. Newman KL, Rogers JH, McCulloch D, Wilcox N, Englund JA, Boeckh M, Uyeki TM, Jackson ML, Starita L, Hughes JP, Chu HY. Point-of-care molecular testing and antiviral treatment of influenza in residents of homeless shelters in Seattle, WA: study protocol for a stepped-wedge cluster-randomized controlled trial. Trials. 2020 Nov 23; 21(1):956. PMID: 33228787.
      View in: PubMed
    3. Mitchell KM, Dimitrov D, Hughes JP, Moore M, Vittinghoff E, Liu A, Cohen MS, Beyrer C, Donnell D, Boily MC. Assessing the use of surveillance data to estimate the impact of prevention interventions on HIV incidence in cluster-randomized controlled trials. Epidemics. 2020 Nov 20; 33:100423. PMID: 33285419.
      View in: PubMed
    4. Fogel JM, Bonsall D, Cummings V, Bowden R, Golubchik T, de Cesare M, Wilson EA, Gamble T, Del Rio C, Batey DS, Mayer KH, Farley JE, Hughes JP, Remien RH, Beyrer C, Fraser C, Eshleman SH. Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load. J Antimicrob Chemother. 2020 Aug 08. PMID: 32772080.
      View in: PubMed
    5. Srinivasan S, Chambers LC, Tapia KA, Hoffman NG, Munch MM, Morgan JL, Domogala D, Lowens MS, Proll S, Huang ML, Soge OO, Jerome KR, Golden MR, Hughes JP, Fredricks DN, Manhart LE. Urethral microbiota in men: Association of Haemophilus influenzae and Mycoplasma penetrans with nongonococcal urethritis. Clin Infect Dis. 2020 Aug 05. PMID: 32750107.
      View in: PubMed
    6. Avoundjian T, Golden MR, Ramchandani MS, Guthrie BL, Hughes JP, Baseman JG, Dombrowski JC. Evaluation of an Emergency Department and Hospital-Based Data Exchange to Improve HIV Care Engagement and Viral Suppression. Sex Transm Dis. 2020 Aug; 47(8):535-540. PMID: 32404856.
      View in: PubMed
    7. Dimitrov D, Moore JR, Wood D, Mitchell KM, Li M, Hughes JP, Donnell DJ, Mannheimer S, Holtz TH, Grant RM, Boily MC. Predicted Effectiveness of Daily and Nondaily Preexposure Prophylaxis for Men Who Have Sex With Men Based on Sex and Pill-taking Patterns From the Human Immuno Virus Prevention Trials Network 067/ADAPT Study. Clin Infect Dis. 2020 Jul 11; 71(2):249-255. PMID: 31437276.
      View in: PubMed
    8. Li F, Hughes JP, Hemming K, Taljaard M, Melnick ER, Heagerty PJ. Mixed-effects models for the design and analysis of stepped wedge cluster randomized trials: An overview. Stat Methods Med Res. 2020 Jul 06; 962280220932962. PMID: 32631142.
      View in: PubMed
    9. Silhol R, Boily MC, Dimitrov D, German D, Flynn C, Farley JE, Gelman M, Hughes JP, Donnell D, Adeyeye A, Remien RH, Beyrer C, Paz-Bailey G, Wejnert C, Mitchell KM. Understanding the HIV Epidemic Among MSM in Baltimore: A Modeling Study Estimating the Impact of Past HIV Interventions and Who Acquired and Contributed to Infections. . 2020 Jul 01; 84(3):253-262. PMID: 32141958.
      View in: PubMed
    10. Goin DE, Pearson RM, Craske MG, Stein A, Pettifor A, Lippman SA, Kahn K, Neilands TB, Hamilton EL, Selin A, MacPhail C, Wagner RG, Gomez-Olive FX, Twine R, Hughes JP, Agyei Y, Laeyendecker O, Tollman S, Ahern J. Depression and Incident HIV in Adolescent Girls and Young Women in HIV Prevention Trials Network 068: Targets for Prevention and Mediating Factors. Am J Epidemiol. 2020 05 05; 189(5):422-432. PMID: 31667490.
      View in: PubMed
    11. Rao DW, Hughes JP, Brady K, Golden MR. The Potential Impact of One-Time Routine HIV Screening on Prevention and Clinical Outcomes in the United States: A Model-Based Analysis. Sex Transm Dis. 2020 05; 47(5):306-313. PMID: 32044862.
      View in: PubMed
    12. Avoundjian T, Dombrowski JC, Golden MR, Hughes JP, Guthrie BL, Baseman J, Sadinle M. Comparing Methods for Record Linkage for Public Health Action: Matching Algorithm Validation Study. JMIR Public Health Surveill. 2020 04 30; 6(2):e15917. PMID: 32352389.
      View in: PubMed
    13. Giovenco D, Kahn K, Hughes JP, MacPhail C, Wagner R, Pettifor A. Self-Esteem as an Indicator of Transactional Sex Among Young Women in Rural South Africa (HPTN 068). AIDS Behav. 2020 Mar; 24(3):823-826. PMID: 31624977.
      View in: PubMed
    14. Fogel JM, Sivay MV, Cummings V, Wilson EA, Hart S, Gamble T, Laeyendecker O, Fernandez RE, Del Rio C, Batey DS, Mayer KH, Farley JE, McKinstry L, Hughes JP, Remien RH, Beyrer C, Eshleman SH. HIV drug resistance in a cohort of HIV-infected MSM in the United States. AIDS. 2020 01 01; 34(1):91-101. PMID: 31634196.
      View in: PubMed
    15. Velloza J, Bacchetti P, Hendrix CW, Murnane P, Hughes JP, Li M, Curlin ME, Holtz TH, Mannheimer S, Marzinke MA, Amico KR, Liu A, Piwowar-Manning E, Eshleman SH, Dye BJ, Gandhi M, Grant RM. Short- and Long-Term Pharmacologic Measures of HIV Pre-exposure Prophylaxis Use Among High-Risk Men Who Have Sex With Men in HPTN 067/ADAPT. . 2019 10 01; 82(2):149-158. PMID: 31335588.
      View in: PubMed
    16. Stoner MCD, Neilands TB, Kahn K, Hughes JP, Gómez-Olivé FX, Twine R, Tollman S, Laeyendecker O, MacPhail C, Ahern J, Lippman SA, Pettifor A. Multilevel Measures of Education and Pathways to Incident Herpes Simplex Virus Type 2 in Adolescent Girls and Young Women in South Africa. J Adolesc Health. 2019 12; 65(6):723-729. PMID: 31521513.
      View in: PubMed
    17. Ojeda VD, Amico KR, Hughes JP, Wilson E, Li M, Holtz TH, Chitwarakorn A, Grant RM, Dye BJ, Bekker LG, Mannheimer S, Marzinke M, Hendrix CW. Low Disclosure of PrEP Nonadherence and HIV-Risk Behaviors Associated With Poor HIV PrEP Adherence in the HPTN 067/ADAPT Study. . 2019 09 01; 82(1):34-40. PMID: 31169769.
      View in: PubMed
    18. Nguyen N, Powers KA, Miller WC, Howard AG, Halpern CT, Hughes JP, Wang J, Twine R, Gomez-Olive FX, MacPhail C, Kahn K, Pettifor AE. Sexual Partner Types and Incident HIV Infection Among Rural South African Adolescent Girls and Young Women Enrolled in HPTN 068: A Latent Class Analysis. . 2019 09 01; 82(1):24-33. PMID: 31169772.
      View in: PubMed
    19. Giovenco D, Pettifor A, MacPhail C, Kahn K, Wagner R, Piwowar-Manning E, Wang J, Hughes JP. Assessing risk for HIV infection among adolescent girls in South Africa: an evaluation of the VOICE risk score (HPTN 068). J Int AIDS Soc. 2019 07; 22(7):e25359. PMID: 31353814.
      View in: PubMed
    20. Xi LF, Schiffman M, Hughes JP, Galloway DA, Koutsky LA, Kiviat NB. Changes in DNA Level of Oncogenic Human Papillomaviruses Other Than Types 16 and 18 in Relation to Risk of Cervical Intraepithelial Neoplasia Grades 2 and 3. Cancer Epidemiol Biomarkers Prev. 2019 08; 28(8):1388-1394. PMID: 31101617.
      View in: PubMed
    21. Stoner MCD, Dennis AM, Hughes JP, Eshleman SH, Sivay MV, Hudelson SE, Grabowski MK, Gómez-Olivé FX, MacPhail C, Piwowar-Manning E, Kahn K, Pettifor A. Characteristics Associated With Human Immunodeficiency Virus Transmission Networks Involving Adolescent Girls and Young Women in Human Immunodeficiency Virus Prevention Trials Network 068 Study. Sex Transm Dis. 2019 05; 46(5):e46-e49. PMID: 30985638.
      View in: PubMed
    22. Mannheimer S, Hirsch-Moverman Y, Franks J, Loquere A, Hughes JP, Li M, Amico KR, Grant RM. Factors Associated With Sex-Related Pre-exposure Prophylaxis Adherence Among Men Who Have Sex With Men in New York City in HPTN 067. . 2019 04 15; 80(5):551-558. PMID: 30865051.
      View in: PubMed
    23. Mitchell KM, Hoots B, Dimitrov D, German D, Flynn C, Farley JE, Gelman M, Hughes JP, Donnell D, Adeyeye A, Remien RH, Beyrer C, Paz-Bailey G, Boily MC. Improvements in the HIV care continuum needed to meaningfully reduce HIV incidence among men who have sex with men in Baltimore, US: a modelling study for HPTN 078. J Int AIDS Soc. 2019 03; 22(3):e25246. PMID: 30868739.
      View in: PubMed
    24. Stoner MCD, Nguyen N, Kilburn K, Gómez-Olivé FX, Edwards JK, Selin A, Hughes JP, Agyei Y, Macphail C, Kahn K, Pettifor A. Age-disparate partnerships and incident HIV infection in adolescent girls and young women in rural South Africa. AIDS. 2019 01 27; 33(1):83-91. PMID: 30289813.
      View in: PubMed
    25. Sivay MV, Fogel JM, Wang J, Zhang Y, Piwowar-Manning E, Clarke W, Breaud A, Blankson J, Hamilton EL, Kahn K, Selin A, Gomez-Olive FX, MacPhail C, Hughes JP, Pettifor A, Eshleman SH. Natural control of HIV infection in young women in South Africa: HPTN 068. HIV Clin Trials. 2018 10; 19(5):202-208. PMID: 30522410.
      View in: PubMed
    26. Zhang Y, Sivay MV, Hudelson SE, Clarke W, Breaud A, Wang J, Piwowar-Manning E, Agyei Y, Fogel JM, Hamilton EL, Selin A, MacPhail C, Kahn K, Gómez-Olivé FX, Hughes JP, Pettifor A, Eshleman SH. Antiretroviral Drug Use and HIV Drug Resistance Among Young Women in Rural South Africa: HPTN 068. . 2018 11 01; 79(3):315-322. PMID: 29985265.
      View in: PubMed
    27. Hanscom B, Hughes JP, Williamson BD, Donnell D. Adaptive non-inferiority margins under observable non-constancy. Stat Methods Med Res. 2019 Oct-Nov; 28(10-11):3318-3332. PMID: 30293490.
      View in: PubMed
    28. Stoner MCD, Edwards JK, Miller WC, Aiello AE, Halpern CT, Julien A, Rucinski KB, Selin A, Twine R, Hughes JP, Wang J, Agyei Y, Gómez-Olivé FX, Wagner RG, Laeyendecker O, Macphail C, Kahn K, Pettifor A. Does Partner Selection Mediate the Relationship Between School Attendance and HIV/Herpes Simplex Virus-2 Among Adolescent Girls and Young Women in South Africa: An Analysis of HIV Prevention Trials Network 068 Data. . 2018 09 01; 79(1):20-27. PMID: 29847479.
      View in: PubMed
    29. Kilburn K, Ranganathan M, Stoner MCD, Hughes JP, MacPhail C, Agyei Y, Gómez-Olivé FX, Kahn K, Pettifor A. Transactional sex and incident HIV infection in a cohort of young women from rural South Africa. AIDS. 2018 07 31; 32(12):1669-1677. PMID: 29762176.
      View in: PubMed
    30. Hood JE, Bradley H, Hughes JP, Golden MR, Crane HM, Buskin SE, Burkholder GA, Geng E, Kitahata MM, Mathews WC, Moore RD, Hawes SE. Reconciling the evaluation of co-morbidities among HIV care patients in two large data systems: the Medical Monitoring Project and CFAR Network of Integrated Clinical Systems. AIDS Care. 2018 12; 30(12):1551-1559. PMID: 30051719.
      View in: PubMed
    31. Sivay MV, Hudelson SE, Wang J, Agyei Y, Hamilton EL, Selin A, Dennis A, Kahn K, Gomez-Olive FX, MacPhail C, Hughes JP, Pettifor A, Eshleman SH, Grabowski MK. HIV-1 diversity among young women in rural South Africa: HPTN 068. PLoS One. 2018; 13(7):e0198999. PMID: 29975689.
      View in: PubMed
    32. Montgomery BEE, Frew PM, Hughes JP, Wang J, Adimora AA, Haley DF, Kuo I, Jennings L, El-Bassel N, Hodder SL. HIV Risk Characteristics Associated with Violence Against Women: A Longitudinal Study Among Women in the United States. J Womens Health (Larchmt). 2018 11; 27(11):1317-1326. PMID: 29905502.
      View in: PubMed
    33. Grant RM, Mannheimer S, Hughes JP, Hirsch-Moverman Y, Loquere A, Chitwarakorn A, Curlin ME, Li M, Amico KR, Hendrix CW, Anderson PL, Dye BJ, Marzinke MA, Piwowar-Manning E, McKinstry L, Elharrar V, Stirratt M, Rooney JF, Eshleman SH, McNicholl JM, van Griensven F, Holtz TH. Daily and Nondaily Oral Preexposure Prophylaxis in Men and Transgender Women Who Have Sex With Men: The Human Immunodeficiency Virus Prevention Trials Network 067/ADAPT Study. Clin Infect Dis. 2018 05 17; 66(11):1712-1721. PMID: 29420695.
      View in: PubMed
    34. Figueroa DB, Tillotson J, Li M, Piwowar-Manning E, Hendrix CW, Holtz TH, Bokoch K, Bekker LG, van Griensven F, Mannheimer S, Hughes JP, Grant RM, Bumpus NN. Discovery of genetic variants of the kinases that activate tenofovir among individuals in the United States, Thailand, and South Africa: HPTN067. PLoS One. 2018; 13(4):e0195764. PMID: 29641561.
      View in: PubMed
    35. Rosenberg M, Pettifor A, Duta M, Demeyere N, Wagner RG, Selin A, MacPhail C, Laeyendecker O, Hughes JP, Stein A, Tollman S, Kahn K. Executive function associated with sexual risk in young South African women: Findings from the HPTN 068 cohort. PLoS One. 2018; 13(4):e0195217. PMID: 29608615.
      View in: PubMed
    36. Mitchell KM, Dimitrov D, Hughes JP, Xia F, Donnell D, Amico KR, Bokoch K, Chitwarakorn A, Bekker LG, Holtz TH, Mannheimer S, Grant RM, Boily MC. In what circumstances could nondaily preexposure prophylaxis for HIV substantially reduce program costs? AIDS. 2018 03 27; 32(6):809-818. PMID: 29424774.
      View in: PubMed
    37. Rosenberg M, Pettifor A, Twine R, Hughes JP, Gomez-Olive FX, Wagner RG, Sulaimon A, Tollman S, Selin A, MacPhail C, Kahn K. Evidence for sample selection effect and Hawthorne effect in behavioural HIV prevention trial among young women in a rural South African community. BMJ Open. 2018 01 10; 8(1):e019167. PMID: 29326192.
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    38. Halloran ME, Auranen K, Baird S, Basta NE, Bellan SE, Brookmeyer R, Cooper BS, DeGruttola V, Hughes JP, Lessler J, Lofgren ET, Longini IM, Onnela JP, Özler B, Seage GR, Smith TA, Vespignani A, Vynnycky E, Lipsitch M. Simulations for designing and interpreting intervention trials in infectious diseases. BMC Med. 2017 12 29; 15(1):223. PMID: 29287587.
      View in: PubMed
    39. Stoner MCD, Edwards JK, Miller WC, Aiello AE, Halpern CT, Julien A, Selin A, Hughes JP, Wang J, Gomez-Olive FX, Wagner RG, MacPhail C, Kahn K, Pettifor A. Effect of Schooling on Age-Disparate Relationships and Number of Sexual Partners Among Young Women in Rural South Africa Enrolled in HPTN 068. . 2017 12 15; 76(5):e107-e114. PMID: 28902703.
      View in: PubMed
    40. Bekker LG, Roux S, Sebastien E, Yola N, Amico KR, Hughes JP, Marzinke MA, Hendrix CW, Anderson PL, Elharrar V, Stirratt M, Rooney JF, Piwowar-Manning E, Eshleman SH, McKinstry L, Li M, Dye BJ, Grant RM. Daily and non-daily pre-exposure prophylaxis in African women (HPTN 067/ADAPT Cape Town Trial): a randomised, open-label, phase 2 trial. Lancet HIV. 2018 02; 5(2):e68-e78. PMID: 28986029.
      View in: PubMed
    41. Khosropour CM, Dombrowski JC, Hughes JP, Manhart LE, Simoni JM, Golden MR. Operationalizing the Measurement of Seroadaptive Behaviors: A Comparison of Reported Sexual Behaviors and Purposely-Adopted Behaviors Among Men who have Sex with Men (MSM) in Seattle. AIDS Behav. 2017 Oct; 21(10):2935-2944. PMID: 28097616.
      View in: PubMed
    42. Stoner MCD, Pettifor A, Edwards JK, Aiello AE, Halpern CT, Julien A, Selin A, Twine R, Hughes JP, Wang J, Agyei Y, Gomez-Olive FX, Wagner RG, MacPhail C, Kahn K. The effect of school attendance and school dropout on incident HIV and HSV-2 among young women in rural South Africa enrolled in HPTN 068. AIDS. 2017 09 24; 31(15):2127-2134. PMID: 28692544.
      View in: PubMed
    43. Ma S, Stern JE, Feng Q, Hughes JP, Hawes SE, Winer RL. Incidence and risk factors for human papillomavirus infections in young female online daters. J Med Virol. 2017 11; 89(11):2029-2036. PMID: 28667755.
      View in: PubMed
    44. Sivay MV, Li M, Piwowar-Manning E, Zhang Y, Hudelson SE, Marzinke MA, Amico RK, Redd A, Hendrix CW, Anderson PL, Bokoch K, Bekker LG, van Griensven F, Mannheimer S, Hughes JP, Grant R, Eshleman SH. Characterization of HIV Seroconverters in a TDF/FTC PrEP Study: HPTN 067/ADAPT. . 2017 07 01; 75(3):271-279. PMID: 28328548.
      View in: PubMed
    45. Lyons VH, Li L, Hughes JP, Rowhani-Rahbar A. Proposed variations of the stepped-wedge design can be used to accommodate multiple interventions. J Clin Epidemiol. 2017 Jun; 86:160-167. PMID: 28412466.
      View in: PubMed
    46. Hood JE, Golden MR, Hughes JP, Goodreau SM, Siddiqi AE, Buskin SE, Hawes SE. Projected demographic composition of the United States population of people living with diagnosed HIV. AIDS Care. 2017 12; 29(12):1543-1550. PMID: 28395528.
      View in: PubMed
    47. Fu Xi L, Schiffman M, Ke Y, Hughes JP, Galloway DA, He Z, Hulbert A, Winer RL, Koutsky LA, Kiviat NB. Type-dependent association between risk of cervical intraepithelial neoplasia and viral load of oncogenic human papillomavirus types other than types 16 and 18. Int J Cancer. 2017 04 15; 140(8):1747-1756. PMID: 28052328.
      View in: PubMed
    48. Eshleman SH, Hudelson SE, Redd AD, Swanstrom R, Ou SS, Zhang XC, Ping LH, Piwowar-Manning E, Porcella SF, Sievers MF, Martens CA, Bruno D, Dukhovlinova E, McCauley M, Gamble T, Fogel JM, Sabin D, Quinn TC, Gunde L, Maliwichi M, Nhando N, Akelo V, Moyo S, Panchia R, Kumarasamy N, Chotirosniramit N, Melo MG, Pilotto J, Grinsztejn B, Mayer K, Chen YQ, Hughes JP, Cohen MS. Treatment as Prevention: Characterization of Partner Infections in the HIV Prevention Trials Network 052 Trial. . 2017 Jan 01; 74(1):112-116. PMID: 27532476.
      View in: PubMed
    49. Wagner AD, Mugo C, Njuguna IN, Maleche-Obimbo E, Sherr K, Inwani IW, Hughes JP, Wamalwa DC, John-Stewart GC, Slyker JA. Implementation and Operational Research: Active Referral of Children of HIV-Positive Adults Reveals High Prevalence of Undiagnosed HIV. . 2016 Dec 15; 73(5):e83-e89. PMID: 27846074.
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    50. Ásbjörnsdóttir KH, Hughes JP, Wamalwa D, Langat A, Slyker JA, Okinyi HM, Overbaugh J, Benki-Nugent S, Tapia K, Maleche-Obimbo E, Rowhani-Rahbar A, John-Stewart G. Differences in virologic and immunologic response to antiretroviral therapy among HIV-1-infected infants and children. AIDS. 2016 11 28; 30(18):2835-2843. PMID: 27603293.
      View in: PubMed
    51. Pettifor A, MacPhail C, Hughes JP, Selin A, Wang J, Gómez-Olivé FX, Eshleman SH, Wagner RG, Mabuza W, Khoza N, Suchindran C, Mokoena I, Twine R, Andrew P, Townley E, Laeyendecker O, Agyei Y, Tollman S, Kahn K. The effect of a conditional cash transfer on HIV incidence in young women in rural South Africa (HPTN 068): a phase 3, randomised controlled trial. Lancet Glob Health. 2016 12; 4(12):e978-e988. PMID: 27815148.
      View in: PubMed
    52. Safren SA, Hughes JP, Mimiaga MJ, Moore AT, Friedman RK, Srithanaviboonchai K, Limbada M, Williamson BD, Elharrar V, Cummings V, Magidson JF, Gaydos CA, Celentano DD, Mayer KH. Frequency and predictors of estimated HIV transmissions and bacterial STI acquisition among HIV-positive patients in HIV care across three continents. J Int AIDS Soc. 2016; 19(1):21096. PMID: 27687145.
      View in: PubMed
    53. Pettifor A, MacPhail C, Selin A, Gómez-Olivé FX, Rosenberg M, Wagner RG, Mabuza W, Hughes JP, Suchindran C, Piwowar-Manning E, Wang J, Twine R, Daniel T, Andrew P, Laeyendecker O, Agyei Y, Tollman S, Kahn K. HPTN 068: A Randomized Control Trial of a Conditional Cash Transfer to Reduce HIV Infection in Young Women in South Africa-Study Design and Baseline Results. AIDS Behav. 2016 09; 20(9):1863-82. PMID: 26891839.
      View in: PubMed
    54. Hughes JP, Emel L, Hanscom B, Zangeneh S. Design Issues in Transgender Studies. . 2016 08 15; 72 Suppl 3:S248-51. PMID: 27429191.
      View in: PubMed
    55. Ranganathan M, Heise L, Pettifor A, Silverwood RJ, Selin A, MacPhail C, Delany-Moretlwe S, Kahn K, Gómez-Olivé FX, Hughes JP, Piwowar-Manning E, Laeyendecker O, Watts C. Transactional sex among young women in rural South Africa: prevalence, mediators and association with HIV infection. J Int AIDS Soc. 2016; 19(1):20749. PMID: 27469061.
      View in: PubMed
    56. Khosropour CM, Dombrowski JC, Swanson F, Kerani RP, Katz DA, Barbee LA, Hughes JP, Manhart LE, Golden MR. Trends in Serosorting and the Association With HIV/STI Risk Over Time Among Men Who Have Sex With Men. . 2016 06 01; 72(2):189-97. PMID: 26885806.
      View in: PubMed
    57. Colombara DV, Manhart LE, Carter JJ, Hawes SE, Weiss NS, Hughes JP, Qiao YL, Taylor PR, Smith JS, Galloway DA. Absence of an association of human polyomavirus and papillomavirus infection with lung cancer in China: a nested case-control study. BMC Cancer. 2016 06 01; 16:342. PMID: 27246610.
      View in: PubMed
    58. Xi LF, Schiffman M, Koutsky LA, Hughes JP, Hulbert A, Shen Z, Galloway DA, Kiviat NB. Variant-specific persistence of infections with human papillomavirus Types 31, 33, 45, 56 and 58 and risk of cervical intraepithelial neoplasia. Int J Cancer. 2016 09 01; 139(5):1098-105. PMID: 27121353.
      View in: PubMed
    59. Magidson JF, Li X, Mimiaga MJ, Moore AT, Srithanaviboonchai K, Friedman RK, Limbada M, Hughes JP, Cummings V, Gaydos CA, Elharrar V, Celentano D, Mayer KH, Safren SA. Antiretroviral Medication Adherence and Amplified HIV Transmission Risk Among Sexually Active HIV-Infected Individuals in Three Diverse International Settings. AIDS Behav. 2016 Apr; 20(4):699-709. PMID: 26246068.
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    60. Barnabas RV, van Rooyen H, Tumwesigye E, Brantley J, Baeten JM, van Heerden A, Turyamureeba B, Joseph P, Krows M, Thomas KK, Schaafsma TT, Hughes JP, Celum C. Uptake of antiretroviral therapy and male circumcision after community-based HIV testing and strategies for linkage to care versus standard clinic referral: a multisite, open-label, randomised controlled trial in South Africa and Uganda. Lancet HIV. 2016 05; 3(5):e212-20. PMID: 27126488.
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    61. Xu DR, Gong W, Caine ED, Xiao S, Hughes JP, Ng M, Simoni J, He H, Smith KL, Brown HS, Gloyd S. Lay health supporters aided by a mobile phone messaging system to improve care of villagers with schizophrenia in Liuyang, China: protocol for a randomised control trial. BMJ Open. 2016 Jan 20; 6(1):e010120. PMID: 26792221.
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    62. Fu TC, Hughes JP, Feng Q, Hulbert A, Hawes SE, Xi LF, Schwartz SM, Stern JE, Koutsky LA, Winer RL. Epidemiology of Human Papillomavirus Detected in the Oral Cavity and Fingernails of Mid-Adult Women. Sex Transm Dis. 2015 Dec; 42(12):677-85. PMID: 26562696.
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    63. Magaret AS, Mujugira A, Hughes JP, Lingappa J, Bukusi EA, DeBruyn G, Delany-Moretlwe S, Fife KH, Gray GE, Kapiga S, Karita E, Mugo NR, Rees H, Ronald A, Vwalika B, Were E, Celum C, Wald A. Effect of Condom Use on Per-act HSV-2 Transmission Risk in HIV-1, HSV-2-discordant Couples. Clin Infect Dis. 2016 Feb 15; 62(4):456-61. PMID: 26578538.
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    64. Chen I, Clarke W, Ou SS, Marzinke MA, Breaud A, Emel LM, Wang J, Hughes JP, Richardson P, Haley DF, Lucas J, Rompalo A, Justman JE, Hodder SL, Eshleman SH. Antiretroviral Drug Use in a Cohort of HIV-Uninfected Women in the United States: HIV Prevention Trials Network 064. PLoS One. 2015; 10(10):e0140074. PMID: 26445283.
      View in: PubMed
    65. Colombara DV, Manhart LE, Carter JJ, Hawes SE, Weiss NS, Hughes JP, Barnett MJ, Goodman GE, Smith JS, Qiao YL, Galloway DA. Prior human polyomavirus and papillomavirus infection and incident lung cancer: a nested case-control study. Cancer Causes Control. 2015 Dec; 26(12):1835-44. PMID: 26415892.
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    66. Wagenaar BH, Cumbe V, Raunig-Berhó M, Rao D, Napúa M, Hughes JP, Sherr K. Health facility determinants and trends of ICD-10 outpatient psychiatric consultations across Sofala, Mozambique: time-series analyses from 2012 to 2014. BMC Psychiatry. 2015 Sep 23; 15:227. PMID: 26399237.
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    67. Barrere A, Stern JE, Feng Q, Hughes JP, Winer RL. Oncogenic Human Papillomavirus Infections in 18- to 24-Year-Old Female Online Daters. Sex Transm Dis. 2015 Sep; 42(9):492-7. PMID: 26267875.
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    68. Hughes JP, Granston TS, Heagerty PJ. Current issues in the design and analysis of stepped wedge trials. Contemp Clin Trials. 2015 Nov; 45(Pt A):55-60. PMID: 26247569.
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    69. Colombara DV, Hughes JP, Burnett-Hartman AN, Hawes SE, Galloway DA, Schwartz SM, Bostick RM, Potter JD, Manhart LE. Analysis of liquid bead microarray antibody assay data for epidemiologic studies of pathogen-cancer associations. J Immunol Methods. 2015 Oct; 425:45-50. PMID: 26071614.
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    70. Barnabas RV, Baeten JM, Lingappa JR, Thomas KK, Hughes JP, Mugo NR, Delany-Moretlwe S, Gray G, Rees H, Mujugira A, Ronald A, Stevens W, Kapiga S, Wald A, Celum C. Acyclovir Prophylaxis Reduces the Incidence of Herpes Zoster Among HIV-Infected Individuals: Results of a Randomized Clinical Trial. J Infect Dis. 2016 Feb 15; 213(4):551-5. PMID: 26142452.
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    71. Rosenberg M, Pettifor A, Van Rie A, Thirumurthy H, Emch M, Miller WC, Gómez-Olivé FX, Twine R, Hughes JP, Laeyendecker O, Selin A, Kahn K. The Relationship between Alcohol Outlets, HIV Risk Behavior, and HSV-2 Infection among South African Young Women: A Cross-Sectional Study. PLoS One. 2015; 10(5):e0125510. PMID: 25954812.
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    72. Rosenberg M, Pettifor A, Lippman SA, Thirumurthy H, Emch M, Miller WC, Selin A, Gómez-Olivé FX, Hughes JP, Laeyendecker O, Tollman S, Kahn K. Relationship between community-level alcohol outlet accessibility and individual-level herpes simplex virus type 2 infection among young women in South Africa. Sex Transm Dis. 2015 May; 42(5):259-65. PMID: 25868138.
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    73. Hughes JP, Haley DF, Frew PM, Golin CE, Adimora AA, Kuo I, Justman J, Soto-Torres L, Wang J, Hodder S. Regression to the mean and changes in risk behavior following study enrollment in a cohort of U.S. women at risk for HIV. Ann Epidemiol. 2015 Jun; 25(6):439-44. PMID: 25883065.
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    74. Golden MR, Kerani RP, Stenger M, Hughes JP, Aubin M, Malinski C, Holmes KK. Uptake and population-level impact of expedited partner therapy (EPT) on Chlamydia trachomatis and Neisseria gonorrhoeae: the Washington State community-level randomized trial of EPT. PLoS Med. 2015 Jan; 12(1):e1001777. PMID: 25590331.
      View in: PubMed
    75. Barnabas RV, van Rooyen H, Tumwesigye E, Murnane PM, Baeten JM, Humphries H, Turyamureeba B, Joseph P, Krows M, Hughes JP, Celum C. Initiation of antiretroviral therapy and viral suppression after home HIV testing and counselling in KwaZulu-Natal, South Africa, and Mbarara district, Uganda: a prospective, observational intervention study. Lancet HIV. 2014 Nov; 1(2):e68-e76. PMID: 25601912.
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    76. Xi LF, Schiffman M, Koutsky LA, Hughes JP, Winer RL, Mao C, Hulbert A, Lee SK, Shen Z, Kiviat NB. Lineages of oncogenic human papillomavirus types other than type 16 and 18 and risk for cervical intraepithelial neoplasia. J Natl Cancer Inst. 2014 Oct; 106(10). PMID: 25217779.
      View in: PubMed
    77. Hanisch RA, Cherne SL, Sow PS, Winer RL, Hughes JP, Feng Q, Gottlieb GS, Toure M, Dem A, Kiviat NB, Hawes SE. Human papillomavirus type 16 viral load in relation to HIV infection, cervical neoplasia and cancer in Senegal. Cancer Epidemiol. 2014 Aug; 38(4):369-75. PMID: 24852136.
      View in: PubMed
    78. Haley DF, Golin C, El-Sadr W, Hughes JP, Wang J, Roman Isler M, Mannheimer S, Kuo I, Lucas J, DiNenno E, Justman J, Frew PM, Emel L, Rompalo A, Polk S, Adimora AA, Rodriquez L, Soto-Torres L, Hodder S. Venue-based recruitment of women at elevated risk for HIV: an HIV Prevention Trials Network study. J Womens Health (Larchmt). 2014 Jun; 23(6):541-51. PMID: 24742266.
      View in: PubMed
    79. Haley DF, Lucas J, Golin CE, Wang J, Hughes JP, Emel L, El-Sadr W, Frew PM, Justman J, Adimora AA, Watson CC, Mannheimer S, Rompalo A, Soto-Torres L, Tims-Cook Z, Carter Y, Hodder SL. Retention strategies and factors associated with missed visits among low income women at increased risk of HIV acquisition in the US (HPTN 064). AIDS Patient Care STDS. 2014 Apr; 28(4):206-17. PMID: 24697160.
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    80. Adimora AA, Hughes JP, Wang J, Haley DF, Golin CE, Magnus M, Rompalo A, Justman J, del Rio C, El-Sadr W, Mannheimer S, Soto-Torres L, Hodder SL. Characteristics of multiple and concurrent partnerships among women at high risk for HIV infection. . 2014 Jan 01; 65(1):99-106. PMID: 24056163.
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    81. Celum C, Baeten JM, Hughes JP, Barnabas R, Liu A, Van Rooyen H, Buchbinder S. Integrated strategies for combination HIV prevention: principles and examples for men who have sex with men in the Americas and heterosexual African populations. . 2013 Jul; 63 Suppl 2:S213-20. PMID: 23764638.
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    82. Donnell D, Hughes JP, Wang L, Chen YQ, Fleming TR. Study design considerations for evaluating efficacy of systemic preexposure prophylaxis interventions. . 2013 Jul; 63 Suppl 2:S130-4. PMID: 23764624.
      View in: PubMed
    83. Dai JY, Gilbert PB, Hughes JP, Brown ER. Estimating the efficacy of preexposure prophylaxis for HIV prevention among participants with a threshold level of drug concentration. Am J Epidemiol. 2013 Feb 01; 177(3):256-63. PMID: 23302152.
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    84. Hodder SL, Justman J, Hughes JP, Wang J, Haley DF, Adimora AA, Del Rio C, Golin CE, Kuo I, Rompalo A, Soto-Torres L, Mannheimer SB, Johnson-Lewis L, Eshleman SH, El-Sadr WM. HIV acquisition among women from selected areas of the United States: a cohort study. Ann Intern Med. 2013 Jan 01; 158(1):10-8. PMID: 23277896.
      View in: PubMed
    85. Eshleman SH, Hughes JP, Laeyendecker O, Wang J, Brookmeyer R, Johnson-Lewis L, Mullis CE, Hackett J, Vallari AS, Justman J, Hodder S. Use of a multifaceted approach to analyze HIV incidence in a cohort study of women in the United States: HIV Prevention Trials Network 064 Study. J Infect Dis. 2013 Jan 15; 207(2):223-31. PMID: 23129758.
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    86. Edelstein ZR, Schwartz SM, Hawes S, Hughes JP, Feng Q, Stern ME, O'Reilly S, Lee SK, Fu Xi L, Koutsky LA. Rates and determinants of oral human papillomavirus infection in young men. Sex Transm Dis. 2012 Nov; 39(11):860-7. PMID: 23064535.
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    87. Dai JY, Hughes JP. A unified procedure for meta-analytic evaluation of surrogate end points in randomized clinical trials. Biostatistics. 2012 Sep; 13(4):609-24. PMID: 22394448.
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    88. Lu Y, Celum C, Wald A, Baeten JM, Cowan F, Delany-Moretlwe S, Reid SE, Hughes JP, Wilcox E, Corey L, Hendrix CW. Acyclovir achieves a lower concentration in African HIV-seronegative, herpes simplex virus 2-seropositive women than in non-African populations. Antimicrob Agents Chemother. 2012 May; 56(5):2777-9. PMID: 22330926.
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    89. Hughes JP, Baeten JM, Lingappa JR, Magaret AS, Wald A, de Bruyn G, Kiarie J, Inambao M, Kilembe W, Farquhar C, Celum C. Determinants of per-coital-act HIV-1 infectivity among African HIV-1-serodiscordant couples. J Infect Dis. 2012 Feb 01; 205(3):358-65. PMID: 22241800.
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    90. Eshleman SH, Hudelson SE, Redd AD, Wang L, Debes R, Chen YQ, Martens CA, Ricklefs SM, Selig EJ, Porcella SF, Munshaw S, Ray SC, Piwowar-Manning E, McCauley M, Hosseinipour MC, Kumwenda J, Hakim JG, Chariyalertsak S, de Bruyn G, Grinsztejn B, Kumarasamy N, Makhema J, Mayer KH, Pilotto J, Santos BR, Quinn TC, Cohen MS, Hughes JP. Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial. J Infect Dis. 2011 Dec 15; 204(12):1918-26. PMID: 21990420.
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    91. Xi LF, Hughes JP, Castle PE, Edelstein ZR, Wang C, Galloway DA, Koutsky LA, Kiviat NB, Schiffman M. Viral load in the natural history of human papillomavirus type 16 infection: a nested case-control study. J Infect Dis. 2011 May 15; 203(10):1425-33. PMID: 21415020.
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    92. Sánchez J, Sal Y Rosas VG, Hughes JP, Baeten JM, Fuchs J, Buchbinder SP, Koblin BA, Casapia M, Ortiz A, Celum C. Male circumcision and risk of HIV acquisition among MSM. AIDS. 2011 Feb 20; 25(4):519-23. PMID: 21099672.
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    93. Donnell D, Hughes JP, Fleming TR. Challenges in the design of HIV prevention trials in the United States. . 2010 Dec; 55 Suppl 2:S136-40. PMID: 21406984.
      View in: PubMed
    94. Arima Y, Winer RL, Feng Q, Hughes JP, Lee SK, Stern ME, O'Reilly SF, Koutsky LA. Development of genital warts after incident detection of human papillomavirus infection in young men. J Infect Dis. 2010 Oct 15; 202(8):1181-4. PMID: 20812849.
      View in: PubMed
    95. Nelson SJ, Hughes JP, Foxman B, Aral SO, Holmes KK, White PJ, Golden MR. Age- and gender-specific estimates of partnership formation and dissolution rates in the Seattle sex survey. Ann Epidemiol. 2010 Apr; 20(4):308-17. PMID: 20071193.
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    96. Sherr KH, Micek MA, Gimbel SO, Gloyd SS, Hughes JP, John-Stewart GC, Manjate RM, Pfeiffer J, Weiss NS. Quality of HIV care provided by non-physician clinicians and physicians in Mozambique: a retrospective cohort study. AIDS. 2010 Jan; 24 Suppl 1:S59-66. PMID: 20023441.
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    97. Xi LF, Hughes JP, Edelstein ZR, Kiviat NB, Koutsky LA, Mao C, Ho J, Schiffman M. Human Papillomavirus (HPV) type 16 and type 18 DNA Loads at Baseline and Persistence of Type-Specific Infection during a 2-year follow-up. J Infect Dis. 2009 Dec 01; 200(11):1789-97. PMID: 19848609.
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    98. Menza TW, Hughes JP, Celum CL, Golden MR. Prediction of HIV acquisition among men who have sex with men. Sex Transm Dis. 2009 Sep; 36(9):547-55. PMID: 19707108.
      View in: PubMed
    99. Rowhani-Rahbar A, Hughes JP, Koutsky LA. Difficulties in estimating the male-to-female sexual transmissibility of human papillomavirus infection. Sex Transm Dis. 2009 Apr; 36(4):261-3. PMID: 19077921.
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    100. Moore EE, Hawes SE, Scholes D, Boyko EJ, Hughes JP, Fihn SD. Sexual intercourse and risk of symptomatic urinary tract infection in post-menopausal women. J Gen Intern Med. 2008 May; 23(5):595-9. PMID: 18266044.
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    101. Manhart LE, Holmes KK, Hughes JP, Houston LS, Totten PA. Mycoplasma genitalium among young adults in the United States: an emerging sexually transmitted infection. Am J Public Health. 2007 Jun; 97(6):1118-25. PMID: 17463380.
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    102. Gimbel-Sherr SO, Micek MA, Gimbel-Sherr KH, Koepsell T, Hughes JP, Thomas KK, Pfeiffer J, Gloyd SS. Using nurses to identify HAART eligible patients in the Republic of Mozambique: results of a time series analysis. Hum Resour Health. 2007 Feb 28; 5:7. PMID: 17328804.
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    103. Richardson BA, Hughes JP, Benki S. Statistical methods for determining the accuracy of quantitative polymerase chain reaction-based tests. Stat Med. 2007 Feb 20; 26(4):895-902. PMID: 16685704.
      View in: PubMed
    104. Hughes JP, Kulich M. Cluster randomized trials for HIV prevention. Curr Opin HIV AIDS. 2006 Nov; 1(6):471-5. PMID: 19372848.
      View in: PubMed
    105. Hussey MA, Hughes JP. Design and analysis of stepped wedge cluster randomized trials. Contemp Clin Trials. 2007 Feb; 28(2):182-91. PMID: 16829207.
      View in: PubMed
    106. Ou SS, Hughes JP, Richardson BA. Methods for assessing the accuracy of PCR-based tests: comparisons and extensions. Stat Med. 2005 Jun 15; 24(11):1755-64. PMID: 15568209.
      View in: PubMed
    107. Golden MR, Whittington WL, Handsfield HH, Hughes JP, Stamm WE, Hogben M, Clark A, Malinski C, Helmers JR, Thomas KK, Holmes KK. Effect of expedited treatment of sex partners on recurrent or persistent gonorrhea or chlamydial infection. N Engl J Med. 2005 Feb 17; 352(7):676-85. PMID: 15716561.
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    108. Miller L, Thomas K, Hughes JP, Holmes KK, Stout S, Eschenbach DA. Randomised treatment trial of bacterial vaginosis to prevent post-abortion complication. BJOG. 2004 Sep; 111(9):982-8. PMID: 15327614.
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    109. Meier AS, Richardson BA, Hughes JP. Discrete proportional hazards models for mismeasured outcomes. Biometrics. 2003 Dec; 59(4):947-54. PMID: 14969473.
      View in: PubMed
    110. Hughes JP, Totten P. Estimating the accuracy of polymerase chain reaction-based tests using endpoint dilution. Biometrics. 2003 Sep; 59(3):505-11. PMID: 14601751.
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    111. Onda T, Carter JJ, Koutsky LA, Hughes JP, Lee SK, Kuypers J, Kiviat N, Galloway DA. Characterization of IgA response among women with incident HPV 16 infection. Virology. 2003 Jul 20; 312(1):213-21. PMID: 12890634.
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    112. Richardson BA, Hughes JP. Modeling breastmilk infectivity in HIV-1 infected mothers. Biometrics. 2003 Mar; 59(1):179-85. PMID: 12762455.
      View in: PubMed
    113. Bureau A, Shiboski S, Hughes JP. Applications of continuous time hidden Markov models to the study of misclassified disease outcomes. Stat Med. 2003 Feb 15; 22(3):441-62. PMID: 12529874.
      View in: PubMed
    114. Richardson BA, John-Stewart GC, Hughes JP, Nduati R, Mbori-Ngacha D, Overbaugh J, Kreiss JK. Breast-milk infectivity in human immunodeficiency virus type 1-infected mothers. J Infect Dis. 2003 Mar 01; 187(5):736-40. PMID: 12599046.
      View in: PubMed
    115. Hughes JP, Garnett GP, Koutsky L. The theoretical population-level impact of a prophylactic human papilloma virus vaccine. Epidemiology. 2002 Nov; 13(6):631-9. PMID: 12410003.
      View in: PubMed
    116. Drain PK, Holmes KK, Hughes JP, Koutsky LA. Determinants of cervical cancer rates in developing countries. Int J Cancer. 2002 Jul 10; 100(2):199-205. PMID: 12115570.
      View in: PubMed
    117. Xi LF, Carter JJ, Galloway DA, Kuypers J, Hughes JP, Lee SK, Adam DE, Kiviat NB, Koutsky LA. Acquisition and natural history of human papillomavirus type 16 variant infection among a cohort of female university students. Cancer Epidemiol Biomarkers Prev. 2002 Apr; 11(4):343-51. PMID: 11927494.
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