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- Nugen, Sam
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Sam R Nugen BS, MS, PhD

Title	Assistant Professor
Institution	University of Massachusetts Amherst
Department	College of Natural Sciences
Address	246 Chenoweth Laboratory Amherst, MA 01003
Phone	413.545.1025
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Bibliographic

selected publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Alonzo LF, Hinkley TC, Miller A, Calderon R, Garing S, Williford J, Clute-Reinig N, Spencer E, Friend M, Madan D, Dinh VTT, Bell D, Weigl BH, Nugen SR, Nichols KP, Le Ny AM. A microfluidic device and instrument prototypes for the detection of Escherichia coli in water samples using a phage-based bioluminescence assay. Lab Chip. 2022 05 31; 22(11):2155-2164. PMID: 35521688.

Citations: 1 Fields:
Bio Biotechnology Che Chemistry
Translation:Cells
Alonzo LF, Jain P, Hinkley T, Clute-Reinig N, Garing S, Spencer E, Dinh VTT, Bell D, Nugen S, Nichols KP, Le Ny AM. Rapid, sensitive, and low-cost detection of Escherichia coli bacteria in contaminated water samples using a phage-based assay. Sci Rep. 2022 05 11; 12(1):7741. PMID: 35562180.

Citations: Fields:
Sci Science
Translation:Cells
Carmody CM, Farquharson EL, Nugen SR. Enterobacteria Phage SV76 Host Range and Genomic Characterization. Phage (New Rochelle). 2022 Mar; 3(1):59-63. PMID: 35495085.

Citations:
Farquharson EL, Lightbown A, Pulkkinen E, Russell T, Werner B, Nugen SR. Evaluating Phage Tail Fiber Receptor-Binding Proteins Using a Luminescent Flow-Through 96-Well Plate Assay. Front Microbiol. 2021; 12:741304. PMID: 34975779.

Citations:
Carmody CM, Goddard JM, Nugen SR. Bacteriophage Capsid Modification by Genetic and Chemical Methods. Bioconjug Chem. 2021 03 17; 32(3):466-481. PMID: 33661607.

Citations: Fields:
Bio Biochemistry
Translation:Cells
Chen A, Wang D, Nugen SR, Chen J. An Engineered Reporter Phage for the Fluorometric Detection of Escherichia coli in Ground Beef. Microorganisms. 2021 Feb 19; 9(2). PMID: 33669833.

Citations:
McLamore ES, Alocilja E, Gomes C, Gunasekaran S, Jenkins D, Datta SPA, Li Y, Mao YJ, Nugen SR, Reyes-De-Corcuera JI, Takhistov P, Tsyusko O, Cochran JP, Tzeng TJ, Yoon JY, Yu C, Zhou A. FEAST of biosensors: Food, environmental and agricultural sensing technologies (FEAST) in North America. Biosens Bioelectron. 2021 Apr 15; 178:113011. PMID: 33517232.

Citations: 2 Fields:
Bio Biotechnology
Duong MM, Carmody CM, Ma Q, Peters JE, Nugen SR. Optimization of T4 phage engineering via CRISPR/Cas9. Sci Rep. 2020 10 26; 10(1):18229. PMID: 33106580.

Citations: 6 Fields:
Sci Science
Translation:Cells
Duong MM, Carmody CM, Nugen SR. Phage-based biosensors: in vivo analysis of native T4 phage promoters to enhance reporter enzyme expression. Analyst. 2020 Sep 28; 145(19):6291-6297. PMID: 32945826.

Citations: 1 Fields:
Che Chemistry Techniques
Translation:Cells
Zurier HS, Duong MM, Goddard JM, Nugen SR. Engineering Biorthogonal Phage-Based Nanobots for Ultrasensitive, In Situ Bacteria Detection. ACS Appl Bio Mater. 2020 Sep 21; 3(9):5824-5831. PMID: 34179727.

Citations: 1 Fields:
Bio Biomedical Engineering Bio Biotechnology
Hinkley TC, Garing S, Jain P, Williford J, Le Ny AM, Nichols KP, Peters JE, Talbert JN, Nugen SR. A Syringe-Based Biosensor to Rapidly Detect Low Levels of Escherichia Coli (ECOR13) in Drinking Water Using Engineered Bacteriophages. Sensors (Basel). 2020 Mar 31; 20(7). PMID: 32244369.

Citations: 5 Fields:
Bio Biotechnology Tec Technology
Translation:Humans Cells PHPublic Health
Singh S, Hinkley T, Nugen SR, Talbert JN. Colorimetric detection of Escherichia coli using engineered bacteriophage and an affinity reporter system. Anal Bioanal Chem. 2019 Nov; 411(27):7273-7279. PMID: 31511947.

Citations: 4 Fields:
Che Chemistry Techniques
Translation:Cells
Pulkkinen EM, Hinkley TC, Nugen SR. Utilizing in vitro DNA assembly to engineer a synthetic T7 Nanoluc reporter phage for Escherichia coli detection. Integr Biol (Camb). 2019 Mar 30. PMID: 30927414.

Citations: 8 Fields:
Bio Biology
Chen J, Nugen SR. Detection of protease and engineered phage-infected bacteria using peptide-graphene oxide nanosensors. Anal Bioanal Chem. 2019 May; 411(12):2487-2492. PMID: 30903224.

Citations: 2 Fields:
Che Chemistry Techniques
Translation:Cells
Wang D, Hinkley T, Chen J, Talbert JN, Nugen SR. Phage based electrochemical detection of Escherichia coli in drinking water using affinity reporter probes. Analyst. 2019 Feb 11; 144(4):1345-1352. PMID: 30564809.

Citations: 7 Fields:
Che Chemistry Techniques
Translation:Cells
Hinkley TC, Singh S, Garing S, Le Ny AM, Nichols KP, Peters JE, Talbert JN, Nugen SR. A phage-based assay for the rapid, quantitative, and single CFU visualization of E. coli (ECOR #13) in drinking water. Sci Rep. 2018 10 02; 8(1):14630. PMID: 30279488.

Citations: 13 Fields:
Sci Science
Translation:Cells PHPublic Health
Hinkley TC, Garing S, Singh S, Le Ny AM, Nichols KP, Peters JE, Talbert JN, Nugen SR. Reporter bacteriophage T7NLC utilizes a novel NanoLuc::CBM fusion for the ultrasensitive detection of Escherichia coli in water. Analyst. 2018 Aug 20; 143(17):4074-4082. PMID: 30069563.

Citations: 15 Fields:
Che Chemistry Techniques
Translation:Cells PHPublic Health
Chen J, Picard RA, Wang D, Nugen SR. Lyophilized Engineered Phages for Escherichia coli Detection in Food Matrices. ACS Sens. 2017 11 22; 2(11):1573-1577. PMID: 29043791.

Citations: 5 Fields:
Bio Biotechnology Che Chemistry Techniques
Translation:Cells PHPublic Health
Chen J, Alcaine SD, Jackson AA, Rotello VM, Nugen SR. Development of Engineered Bacteriophages for Escherichia coli Detection and High-Throughput Antibiotic Resistance Determination. ACS Sens. 2017 Apr 28; 2(4):484-489. PMID: 28723178.

Citations: 11 Fields:
Bio Biotechnology Che Chemistry Techniques
Chen J, Andler SM, Goddard JM, Nugen SR, Rotello VM. Integrating recognition elements with nanomaterials for bacteria sensing. Chem Soc Rev. 2017 Mar 06; 46(5):1272-1283. PMID: 27942636.

Citations: 47 Fields:
Che Chemistry
Translation:Humans Cells
Wang D, Chen J, Nugen SR. Electrochemical Detection of Escherichia coli from Aqueous Samples Using Engineered Phages. Anal Chem. 2017 02 07; 89(3):1650-1657. PMID: 28208254.

Citations: 10 Fields:
Che Chemistry Techniques
Translation:Cells PHPublic Health
Dai M, Chen J, Goddard JM, Nugen SR. Facile hierarchical assembly of gold particle decorated conductive polymer nanofibers for electrochemical sensing. Nanotechnology. 2017 Feb 10; 28(6):06LT01. PMID: 28044995.

Citations: Fields:
Nan Nanotechnology
Koo CK, Senecal K, Senecal A, Nugen SR. Dehydration of bacteriophages in electrospun nanofibers: effect of excipients in polymeric solutions. Nanotechnology. 2016 Dec 02; 27(48):485102. PMID: 27819799.

Citations: 4 Fields:
Nan Nanotechnology
Wang D, Wang Z, He F, Kinchla AJ, Nugen SR. Enzymatic Digestion for Improved Bacteria Separation from Leafy Green Vegetables. J Food Prot. 2016 08; 79(8):1378-86. PMID: 27497125.

Citations: 1 Fields:
Env Environmental Health Nut Nutritional Sciences
Translation:Animals Cells PHPublic Health
Jackson AA, Hinkley TC, Talbert JN, Nugen SR, Sela DA. Genetic optimization of a bacteriophage-delivered alkaline phosphatase reporter to detect Escherichia coli. Analyst. 2016 Oct 07; 141(19):5543-8. PMID: 27412402.

Citations: 9 Fields:
Che Chemistry Techniques
Translation:Cells PHPublic Health
Huang K, Chen J, Nugen SR, Goddard JM. Hybrid Antifouling and Antimicrobial Coatings Prepared by Electroless Co-Deposition of Fluoropolymer and Cationic Silica Nanoparticles on Stainless Steel: Efficacy against Listeria monocytogenes. ACS Appl Mater Interfaces. 2016 Jun 29; 8(25):15926-36. PMID: 27268033.

Citations: 3 Fields:
Bio Biomedical Engineering Bio Biotechnology
Translation:Cells
Talbert JN, Alcaine SD, Nugen SR. Engineering bacteriophage for a pragmatic low-resource setting bacterial diagnostic platform. Bioengineered. 2016 Apr; 7(3):132-6. PMID: 27246532.

Citations: 1 Fields:
Bio Biomedical Engineering Bio Biotechnology Mic Microbiology
Translation:Cells
Chen J, Pang S, He L, Nugen SR. Highly sensitive and selective detection of nitrite ions using Fe3O4@SiO2/Au magnetic nanoparticles by surface-enhanced Raman spectroscopy. Biosens Bioelectron. 2016 Nov 15; 85:726-733. PMID: 27262558.

Citations: 14 Fields:
Bio Biotechnology
Wang Z, Wang D, Kinchla AJ, Sela DA, Nugen SR. Rapid screening of waterborne pathogens using phage-mediated separation coupled with real-time PCR detection. Anal Bioanal Chem. 2016 Jun; 408(15):4169-78. PMID: 27071764.

Citations: 5 Fields:
Che Chemistry Techniques
Translation:Cells
Alcaine SD, Law K, Ho S, Kinchla AJ, Sela DA, Nugen SR. Bioengineering bacteriophages to enhance the sensitivity of phage amplification-based paper fluidic detection of bacteria. Biosens Bioelectron. 2016 Aug 15; 82:14-9. PMID: 27031186.

Citations: 9 Fields:
Bio Biotechnology
Translation:Cells PHPublic Health
Chen J, Jackson AA, Rotello VM, Nugen SR. Colorimetric Detection of Escherichia coli Based on the Enzyme-Induced Metallization of Gold Nanorods. Small. 2016 05; 12(18):2469-75. PMID: 26997252.

Citations: 16 Fields:
Bio Biomedical Engineering Nan Nanotechnology
Translation:Cells
Wang P, Pang S, Chen J, McLandsborough L, Nugen SR, Fan M, He L. Label-free mapping of single bacterial cells using surface-enhanced Raman spectroscopy. Analyst. 2016 Feb 21; 141(4):1356-62. PMID: 26750611.

Citations: 7 Fields:
Che Chemistry Techniques
Translation:Cells
Wang Z, Wang D, Chen J, Sela DA, Nugen SR. Development of a novel bacteriophage based biomagnetic separation method as an aid for sensitive detection of viable Escherichia coli. Analyst. 2016 Feb 07; 141(3):1009-16. PMID: 26689710.

Citations: 7 Fields:
Che Chemistry Techniques
Translation:Cells
Alcaine SD, Molla L, Nugen SR, Kruse H. Results of a pilot antibiotic resistance survey of Albanian poultry farms. J Glob Antimicrob Resist. 2016 03; 4:60-64. PMID: 27436396.

Citations: 1 Fields:
Ant Anti-Infective Agents Bac Bacteriology Mic Microbiology
Translation:Animals Cells
Alcaine SD, Pacitto D, Sela DA, Nugen SR. Phage & phosphatase: a novel phage-based probe for rapid, multi-platform detection of bacteria. Analyst. 2015 Nov 21; 140(22):7629-36. PMID: 26421320.

Citations: 11 Fields:
Che Chemistry Techniques
Translation:Humans Cells
Chen J, Duncan B, Wang Z, Wang LS, Rotello VM, Nugen SR. Bacteriophage-based nanoprobes for rapid bacteria separation. Nanoscale. 2015 Oct 21; 7(39):16230-6. PMID: 26315848.

Citations: 9 Fields:
Nan Nanotechnology
Translation:Cells
Chen J, Li Y, Huang K, Wang P, He L, Carter KR, Nugen SR. Nanoimprinted Patterned Pillar Substrates for Surface-Enhanced Raman Scattering Applications. ACS Appl Mater Interfaces. 2015 Oct 07; 7(39):22106-13. PMID: 26402032.

Citations: 9 Fields:
Bio Biomedical Engineering Bio Biotechnology
Translation:Cells
Chen J, Alcaine SD, Jiang Z, Rotello VM, Nugen SR. Detection of Escherichia coli in drinking water using T7 bacteriophage-conjugated magnetic probe. Anal Chem. 2015 Sep 01; 87(17):8977-84. PMID: 26172120.

Citations: 27 Fields:
Che Chemistry Techniques
Translation:Cells
Alcaine SD, Tilton L, Serrano MA, Wang M, Vachet RW, Nugen SR. Phage-protease-peptide: a novel trifecta enabling multiplex detection of viable bacterial pathogens. Appl Microbiol Biotechnol. 2015 Oct; 99(19):8177-85. PMID: 26245682.

Citations: 8 Fields:
Bio Biotechnology Mic Microbiology
Translation:Cells
Chen J, Jiang Z, Ackerman JD, Yazdani M, Hou S, Nugen SR, Rotello VM. Electrochemical nanoparticle-enzyme sensors for screening bacterial contamination in drinking water. Analyst. 2015 Aug 07; 140(15):4991-6. PMID: 26042607.

Citations: 16 Fields:
Che Chemistry Techniques
Translation:Cells
Chen J, Zhou Y, Wang D, He F, Rotello VM, Carter KR, Watkins JJ, Nugen SR. UV-nanoimprint lithography as a tool to develop flexible microfluidic devices for electrochemical detection. Lab Chip. 2015 Jul 21; 15(14):3086-94. PMID: 26095586.

Citations: 18 Fields:
Bio Biotechnology Che Chemistry
Translation:Cells
He F, Grimes J, Alcaine SD, Nugen SR. A hybrid paper and microfluidic chip with electrowetting valves and colorimetric detection. Analyst. 2014 Jun 21; 139(12):3002-8. PMID: 24719901.

Citations: 3 Fields:
Che Chemistry Techniques
Dai M, Senecal A, Nugen SR. Electrospun water-soluble polymer nanofibers for the dehydration and storage of sensitive reagents. Nanotechnology. 2014 Jun 06; 25(22):225101. PMID: 24815520.

Citations: 7 Fields:
Nan Nanotechnology
Translation:Cells
Talbert JN, He F, Seto K, Nugen SR, Goddard JM. Modification of glucose oxidase for the development of biocatalytic solvent inks. Enzyme Microb Technol. 2014 Feb 05; 55:21-5. PMID: 24411441.

Citations: 1 Fields:
Bio Biochemistry Bio Biotechnology Mic Microbiology
Translation:Animals Cells
Wang Y, Nugen SR. Development of fluorescent nanoparticle-labeled lateral flow assay for the detection of nucleic acids. Biomed Microdevices. 2013 Oct; 15(5):751-8. PMID: 23525961.

Citations: 5 Fields:
Bio Biomedical Engineering
Translation:Animals Cells
Koo CK, He F, Nugen SR. An inkjet-printed electrowetting valve for paper-fluidic sensors. Analyst. 2013 Sep 07; 138(17):4998-5004. PMID: 23828822.

Citations: 13 Fields:
Che Chemistry Techniques
Translation:Animals
Dai M, Jin S, Nugen SR. Water-soluble electrospun nanofibers as a method for on-chip reagent storage. Biosensors (Basel). 2012 Oct 08; 2(4):388-95. PMID: 25586029.

Citations: 8 Fields:
Bio Biotechnology
Wang Y, Fill C, Nugen SR. Development of chemiluminescent lateral flow assay for the detection of nucleic acids. Biosensors (Basel). 2012 Jan 18; 2(1):32-42. PMID: 25585630.

Citations: 5 Fields:
Bio Biotechnology
Goddard JM, Mandal S, Nugen SR, Baeumner AJ, Erickson D. Biopatterning for label-free detection. Colloids Surf B Biointerfaces. 2010 Mar 01; 76(1):375-80. PMID: 19939644.

Citations: 2 Fields:
Che Chemistry
Kumanan V, Nugen SR, Baeumner AJ, Chang YF. A biosensor assay for the detection of Mycobacterium avium subsp. paratuberculosis in fecal samples. J Vet Sci. 2009 Mar; 10(1):35-42. PMID: 19255522.

Citations: 4 Fields:
Vet Veterinary Medicine
Translation:Animals Cells
Nugen SR, Asiello PJ, Connelly JT, Baeumner AJ. PMMA biosensor for nucleic acids with integrated mixer and electrochemical detection. Biosens Bioelectron. 2009 Apr 15; 24(8):2428-33. PMID: 19168346.

Citations: 13 Fields:
Bio Biotechnology
Nugen SR, Baeumner AJ. Trends and opportunities in food pathogen detection. Anal Bioanal Chem. 2008 May; 391(2):451-4. PMID: 18347781.

Citations: 11 Fields:
Che Chemistry Techniques
Translation:Humans Cells PHPublic Health
Connelly JT, Nugen SR, Borejsza-Wysocki W, Durst RA, Montagna RA, Baeumner AJ. Human pathogenic Cryptosporidium species bioanalytical detection method with single oocyst detection capability. Anal Bioanal Chem. 2008 May; 391(2):487-95. PMID: 18311563.

Citations: 18 Fields:
Che Chemistry Techniques
Translation:Humans Animals Cells
Nugen SR, Leonard B, Baeumner AJ. Application of a unique server-based oligonucleotide probe selection tool toward a novel biosensor for the detection of Streptococcus pyogenes. Biosens Bioelectron. 2007 May 15; 22(11):2442-8. PMID: 17011180.

Citations: 4 Fields:
Bio Biotechnology
Translation:Cells

Year	Publications
2006	1
2008	3
2009	2
2012	2
2013	3
2014	2
2015	9
2016	10
2017	5
2018	2
2019	4
2020	4
2021	4
2022	3

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