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Brian J Stevenson PhD

TitleAssistant Professor
InstitutionUMass Chan Medical School
AddressVA Bedford Health Care System
200 Spring Road
Bedford MA 01730
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    Other Positions
    InstitutionT.H. Chan School of Medicine

    Collapse Biography 
    Collapse education and training
    University of California, Irvine, Irvine, CA, United StatesBA
    San Jose State University, San Jose, CA, United StatesMA
    University of California, Santa Barbara, Santa Barbara, CA, United StatesPHD

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Fritah H, Graciotti M, Lai-Lai Chiang C, Huguenin-Bergenat AL, Petremand R, Ahmed R, Guillaume P, Schmidt J, Stevenson BJ, Gfeller D, Harari A, Kandalaft LE. Cancer vaccines based on whole-tumor lysate or neoepitopes with validated HLA binding outperform those with predicted HLA-binding affinity. iScience. 2023 Apr 21; 26(4):106288. PMID: 36950115.
    2. Stevenson BJ, Calixte R, Mueller L. Recovery-oriented psychotherapy: Practical recommendations for psychologists in organized care settings. Psychol Serv. 2022 Jul 18. PMID: 35849363.
      Citations:    Fields:    
    3. Gorman JA, Chamberlin ES, Stevenson BJ, Calixte R, Crossman DM, Ahern ME, Mack J, Russo A, Federman EJ. Using Veterans Socials to Build a Community: Feasibility of the VOICES Intervention. Community Ment Health J. 2022 11; 58(8):1544-1553. PMID: 35524906.
      Citations:    Fields:    Translation:Humans
    4. Stevenson BJ, Bakken S, Mueller L, Drebing CE. Why open access to vocational services in substance use treatment matters: Commentary on Cosottile and Defulio (2020). Psychol Addict Behav. 2022 Mar; 36(2):117-120. PMID: 35266785.
      Citations:    Fields:    Translation:Humans
    5. Mohsen MO, Speiser DE, Michaux J, Pak H, Stevenson BJ, Vogel M, Inchakalody VP, de Brot S, Dermime S, Coukos G, Bassani-Sternberg M, Bachmann MF. Bedside formulation of a personalized multi-neoantigen vaccine against mammary carcinoma. J Immunother Cancer. 2022 01; 10(1). PMID: 35017147.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    6. Arnaud M, Chiffelle J, Genolet R, Navarro Rodrigo B, Perez MAS, Huber F, Magnin M, Nguyen-Ngoc T, Guillaume P, Baumgaertner P, Chong C, Stevenson BJ, Gfeller D, Irving M, Speiser DE, Schmidt J, Zoete V, Kandalaft LE, Bassani-Sternberg M, Bobisse S, Coukos G, Harari A. Sensitive identification of neoantigens and cognate TCRs in human solid tumors. Nat Biotechnol. 2022 05; 40(5):656-660. PMID: 34782741.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    7. Bruand M, Barras D, Mina M, Ghisoni E, Morotti M, Lanitis E, Fahr N, Desbuisson M, Grimm A, Zhang H, Chong C, Dagher J, Chee S, Tsianou T, Dorier J, Stevenson BJ, Iseli C, Ronet C, Bobisse S, Genolet R, Walton J, Bassani-Sternberg M, Kandalaft LE, Ren B, McNeish I, Swisher E, Harari A, Delorenzi M, Ciriello G, Irving M, Rusakiewicz S, Foukas PG, Martinon F, Dangaj Laniti D, Coukos G. Cell-autonomous inflammation of BRCA1-deficient ovarian cancers drives both tumor-intrinsic immunoreactivity and immune resistance via STING. Cell Rep. 2021 07 20; 36(3):109412. PMID: 34289354.
      Citations: 22     Fields:    Translation:HumansAnimalsCells
    8. Tanyi JL, Chiang CL, Chiffelle J, Thierry AC, Baumgartener P, Huber F, Goepfert C, Tarussio D, Tissot S, Torigian DA, Nisenbaum HL, Stevenson BJ, Guiren HF, Ahmed R, Huguenin-Bergenat AL, Zsiros E, Bassani-Sternberg M, Mick R, Powell DJ, Coukos G, Harari A, Kandalaft LE. Author Correction: Personalized cancer vaccine strategy elicits polyfunctional T cells and demonstrates clinical benefits in ovarian cancer. NPJ Vaccines. 2021 May 04; 6(1):68. PMID: 33947868.
    9. Pak H, Michaux J, Huber F, Chong C, Stevenson BJ, M?ller M, Coukos G, Bassani-Sternberg M. Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction. Mol Cell Proteomics. 2021; 20:100080. PMID: 33845167.
      Citations: 9     Fields:    Translation:Cells
    10. Tanyi JL, Chiang CL, Chiffelle J, Thierry AC, Baumgartener P, Huber F, Goepfert C, Tarussio D, Tissot S, Torigian DA, Nisenbaum HL, Stevenson BJ, Guiren HF, Ahmed R, Huguenin-Bergenat AL, Zsiros E, Bassani-Sternberg M, Mick R, Powell DJ, Coukos G, Harari A, Kandalaft LE. Personalized cancer vaccine strategy elicits polyfunctional T cells and demonstrates clinical benefits in ovarian cancer. NPJ Vaccines. 2021 Mar 15; 6(1):36. PMID: 33723260.
    11. Stevenson BJ, Mueller L, Kelly MM, Rosenheck RA. Correlates of Obtaining Employment among Veterans Receiving Treatment for Severe PTSD in Specialized Intensive Programs. Psychiatr Q. 2021 09; 92(3):981-994. PMID: 33409927.
      Citations: 1     Fields:    Translation:Humans
    12. Forlani G, Michaux J, Pak H, Huber F, Marie Joseph EL, Ramia E, Stevenson BJ, Linnebacher M, Accolla RS, Bassani-Sternberg M. CIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens. Mol Cell Proteomics. 2021; 20:100032. PMID: 33592498.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    13. Ilaslan E, Markosyan R, Sproll P, Stevenson BJ, Sajek M, Sajek MP, Hayrapetyan H, Sarkisian T, Livshits L, Nef S, Jaruzelska J, Kusz-Zamelczyk K. The FKBP4 Gene, Encoding a Regulator of the Androgen Receptor Signaling Pathway, Is a Novel Candidate Gene for Androgen Insensitivity Syndrome. Int J Mol Sci. 2020 Nov 09; 21(21). PMID: 33182400.
      Citations: 3     Fields:    Translation:HumansCells
    14. Fontana P, Ibberson M, Stevenson B, Wigger L, Daali Y, Niknejad A, Mach F, Docquier M, Xenarios I, Cuisset T, Alessi MC, Reny JL. Contribution of exome sequencing to the identification of genes involved in the response to clopidogrel in cardiovascular patients. J Thromb Haemost. 2020 06; 18(6):1425-1434. PMID: 32077582.
      Citations:    Fields:    Translation:Humans
    15. Chong C, M?ller M, Pak H, Harnett D, Huber F, Grun D, Leleu M, Auger A, Arnaud M, Stevenson BJ, Michaux J, Bilic I, Hirsekorn A, Calviello L, Sim?-Riudalbas L, Planet E, Lubinski J, Bryskiewicz M, Wiznerowicz M, Xenarios I, Zhang L, Trono D, Harari A, Ohler U, Coukos G, Bassani-Sternberg M. Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes. Nat Commun. 2020 03 10; 11(1):1293. PMID: 32157095.
      Citations: 76     Fields:    Translation:HumansCells
    16. Stevenson BJ. Psychotherapy for veterans navigating the military-to-civilian transition: A case study. J Clin Psychol. 2020 05; 76(5):896-904. PMID: 31909827.
      Citations:    Fields:    Translation:Humans
    17. Sarivalasis A, Boudousqui? C, Balint K, Stevenson BJ, Gannon PO, Iancu EM, Rossier L, Martin Lluesma S, Mathevet P, Sempoux C, Coukos G, Dafni U, Harari A, Bassani-Sternberg M, Kandalaft LE. A Phase I/II trial comparing autologous dendritic cell vaccine pulsed either with personalized peptides (PEP-DC) or with tumor lysate (OC-DC) in patients with advanced high-grade ovarian serous carcinoma. J Transl Med. 2019 11 26; 17(1):391. PMID: 31771601.
      Citations: 22     Fields:    Translation:HumansCellsCTClinical Trials
    18. Newey A, Griffiths B, Michaux J, Pak HS, Stevenson BJ, Woolston A, Semiannikova M, Spain G, Barber LJ, Matthews N, Rao S, Watkins D, Chau I, Coukos G, Racle J, Gfeller D, Starling N, Cunningham D, Bassani-Sternberg M, Gerlinger M. Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment. J Immunother Cancer. 2019 11 18; 7(1):309. PMID: 31735170.
      Citations: 48     Fields:    Translation:Humans
    19. Bassani-Sternberg M, Digklia A, Huber F, Wagner D, Sempoux C, Stevenson BJ, Thierry AC, Michaux J, Pak H, Racle J, Boudousquie C, Balint K, Coukos G, Gfeller D, Martin Lluesma S, Harari A, Demartines N, Kandalaft LE. A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma-A Proof of Antigen Discovery Feasibility in Three Patients. Front Immunol. 2019; 10:1832. PMID: 31440238.
      Citations: 32     Fields:    Translation:HumansCellsCTClinical Trials
    20. Tanyi JL, Bobisse S, Ophir E, Tuyaerts S, Roberti A, Genolet R, Baumgartner P, Stevenson BJ, Iseli C, Dangaj D, Czerniecki B, Semilietof A, Racle J, Michel A, Xenarios I, Chiang C, Monos DS, Torigian DA, Nisenbaum HL, Michielin O, June CH, Levine BL, Powell DJ, Gfeller D, Mick R, Dafni U, Zoete V, Harari A, Coukos G, Kandalaft LE. Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer. Sci Transl Med. 2018 04 11; 10(436). PMID: 29643231.
      Citations: 164     Fields:    Translation:HumansCells
    21. Bobisse S, Genolet R, Roberti A, Tanyi JL, Racle J, Stevenson BJ, Iseli C, Michel A, Le Bitoux MA, Guillaume P, Schmidt J, Bianchi V, Dangaj D, Fenwick C, Derr? L, Xenarios I, Michielin O, Romero P, Monos DS, Zoete V, Gfeller D, Kandalaft LE, Coukos G, Harari A. Sensitive and frequent identification of high avidity neo-epitope?specific CD8 + T cells in immunotherapy-naive ovarian cancer. Nat Commun. 2018 03 15; 9(1):1092. PMID: 29545564.
      Citations: 70     Fields:    Translation:HumansCells
    22. Cassatella D, Howard SR, Acierno JS, Xu C, Papadakis GE, Santoni FA, Dwyer AA, Santini S, Sykiotis GP, Chambion C, Meylan J, Marino L, Favre L, Li J, Liu X, Zhang J, Bouloux PM, Geyter C, Paepe A, Dhillo WS, Ferrara JM, Hauschild M, Lang-Muritano M, Lemke JR, Fl?ck C, Nemeth A, Phan-Hug F, Pignatelli D, Popovic V, Pekic S, Quinton R, Szinnai G, l'Allemand D, Konrad D, Sharif S, Iyidir ?T, Stevenson BJ, Yang H, Dunkel L, Pitteloud N. Congenital hypogonadotropic hypogonadism and constitutional delay of growth and puberty have distinct genetic architectures. Eur J Endocrinol. 2018 Apr; 178(4):377-388. PMID: 29419413.
      Citations: 32     Fields:    Translation:Humans
    23. van Karnebeek CDM, Bonaf? L, Wen XY, Tarailo-Graovac M, Balzano S, Royer-Bertrand B, Ashikov A, Garavelli L, Mammi I, Turolla L, Breen C, Donnai D, Cormier V, Heron D, Nishimura G, Uchikawa S, Campos-Xavier B, Rossi A, Hennet T, Brand-Arzamendi K, Rozmus J, Harshman K, Stevenson BJ, Girardi E, Superti-Furga G, Dewan T, Collingridge A, Halparin J, Ross CJ, Van Allen MI, Rossi A, Engelke UF, Kluijtmans LAJ, van der Heeft E, Renkema H, de Brouwer A, Huijben K, Zijlstra F, Heisse T, Boltje T, Wasserman WW, Rivolta C, Unger S, Lefeber DJ, Wevers RA, Superti-Furga A. Corrigendum: NANS-mediated synthesis of sialic acid is required for brain and skeletal development. Nat Genet. 2017 05 26; 49(6):969. PMID: 28546570.
      Citations: 3     Fields:    
    24. Devalla HD, G?linas R, Aburawi EH, Beqqali A, Goyette P, Freund C, Chaix MA, Tadros R, Jiang H, Le B?chec A, Monshouwer-Kloots JJ, Zwetsloot T, Kosmidis G, Latour F, Alikashani A, Hoekstra M, Schlaepfer J, Mummery CL, Stevenson B, Kutalik Z, de Vries AA, Rivard L, Wilde AA, Talajic M, Verkerk AO, Al-Gazali L, Rioux JD, Bhuiyan ZA, Passier R. TECRL, a new life-threatening inherited arrhythmia gene associated with overlapping clinical features of both LQTS and CPVT. EMBO Mol Med. 2016 12; 8(12):1390-1408. PMID: 27861123.
      Citations: 47     Fields:    Translation:HumansCells
    25. Arnold WK, Savage CR, Brissette CA, Seshu J, Livny J, Stevenson B. RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs. PLoS One. 2016; 11(10):e0164165. PMID: 27706236.
      Citations: 34     Fields:    Translation:Cells
    26. Prunotto A, Stevenson BJ, Berthonneche C, Sch?pfer F, Beckmann JS, Maurer F, Bergmann S. RNAseq analysis of heart tissue from mice treated with atenolol and isoproterenol reveals a reciprocal transcriptional response. BMC Genomics. 2016 09 07; 17:717. PMID: 27604219.
      Citations: 4     Fields:    Translation:Animals
    27. Kiper POS, Saito H, Gori F, Unger S, Hesse E, Yamana K, Kiviranta R, Solban N, Liu J, Brommage R, Boduroglu K, Bonaf? L, Campos-Xavier B, Dikoglu E, Eastell R, Gossiel F, Harshman K, Nishimura G, Girisha KM, Stevenson BJ, Takita H, Rivolta C, Superti-Furga A, Baron R. Cortical-Bone Fragility--Insights from sFRP4 Deficiency in Pyle's Disease. N Engl J Med. 2016 Jun 30; 374(26):2553-2562. PMID: 27355534.
      Citations: 54     Fields:    Translation:HumansAnimalsCells
    28. van Karnebeek CD, Bonaf? L, Wen XY, Tarailo-Graovac M, Balzano S, Royer-Bertrand B, Ashikov A, Garavelli L, Mammi I, Turolla L, Breen C, Donnai D, Cormier-Daire V, Heron D, Nishimura G, Uchikawa S, Campos-Xavier B, Rossi A, Hennet T, Brand-Arzamendi K, Rozmus J, Harshman K, Stevenson BJ, Girardi E, Superti-Furga G, Dewan T, Collingridge A, Halparin J, Ross CJ, Van Allen MI, Rossi A, Engelke UF, Kluijtmans LA, van der Heeft E, Renkema H, de Brouwer A, Huijben K, Zijlstra F, Heise T, Boltje T, Wasserman WW, Rivolta C, Unger S, Lefeber DJ, Wevers RA, Superti-Furga A. NANS-mediated synthesis of sialic acid is required for brain and skeletal development. Nat Genet. 2016 07; 48(7):777-84. PMID: 27213289.
      Citations: 64     Fields:    Translation:HumansAnimalsCells
    29. Segarra NG, Ballhausen D, Crawford H, Perreau M, Campos-Xavier B, van Spaendonck-Zwarts K, Vermeer C, Russo M, Zambelli PY, Stevenson B, Royer-Bertrand B, Rivolta C, Candotti F, Unger S, Munier FL, Superti-Furga A, Bonaf? L. NBAS mutations cause a multisystem disorder involving bone, connective tissue, liver, immune system, and retina. Am J Med Genet A. 2015 Dec; 167A(12):2902-12. PMID: 26286438.
      Citations: 26     Fields:    Translation:Humans
    30. Dikoglu E, Alfaiz A, Gorna M, Bertola D, Chae JH, Cho TJ, Derbent M, Alanay Y, Guran T, Kim OH, Llerenar JC, Yamamoto G, Superti-Furga G, Reymond A, Xenarios I, Stevenson B, Campos-Xavier B, Bonaf? L, Superti-Furga A, Unger S. Mutations in LONP1, a mitochondrial matrix protease, cause CODAS syndrome. Am J Med Genet A. 2015 Jul; 167(7):1501-9. PMID: 25808063.
      Citations: 30     Fields:    Translation:HumansCells
    31. Guex N, Crespo I, Bron S, Ifticene-Treboux A, Faes-Van't Hull E, Kharoubi S, Liechti R, Werffeli P, Ibberson M, Majo F, Nicolas M, Laurent J, Garg A, Zaman K, Lehr HA, Stevenson BJ, R?egg C, Coukos G, Delaloye JF, Xenarios I, Doucey MA. Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches. PLoS Comput Biol. 2015 Mar; 11(3):e1004050. PMID: 25768678.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    32. ?rias U, Marie SK, Uno M, da Silva R, Evagelinellis MM, Caballero OL, Stevenson BJ, Silva WA, Simpson AJ, Oba-Shinjo SM. CD99 is upregulated in placenta and astrocytomas with a differential subcellular distribution according to the malignancy stage. J Neurooncol. 2014 Aug; 119(1):59-70. PMID: 24797829.
      Citations: 4     Fields:    Translation:HumansCells
    33. Bonaf? L, Liang J, Gorna MW, Zhang Q, Ha-Vinh R, Campos-Xavier AB, Unger S, Beckmann JS, Le B?chec A, Stevenson B, Giedion A, Liu X, Superti-Furga G, Wang W, Spahr A, Superti-Furga A. MMP13 mutations are the cause of recessive metaphyseal dysplasia, Spahr type. Am J Med Genet A. 2014 May; 164A(5):1175-9. PMID: 24648384.
      Citations: 4     Fields:    Translation:HumansCells
    34. Genolet R, Leignadier J, ?ster?s M, Farinelli L, Stevenson BJ, Luescher IF. Duality of the murine CD8 compartment. Proc Natl Acad Sci U S A. 2014 Mar 18; 111(11):E1007-15. PMID: 24594598.
      Citations: 4     Fields:    Translation:AnimalsCells
    35. Unger S, G?rna MW, Le B?chec A, Do Vale-Pereira S, Bedeschi MF, Geiberger S, Grigelioniene G, Horemuzova E, Lalatta F, Lausch E, Magnani C, Nampoothiri S, Nishimura G, Petrella D, Rojas-Ringeling F, Utsunomiya A, Zabel B, Pradervand S, Harshman K, Campos-Xavier B, Bonaf? L, Superti-Furga G, Stevenson B, Superti-Furga A. FAM111A mutations result in hypoparathyroidism and impaired skeletal development. Am J Hum Genet. 2013 Jun 06; 92(6):990-5. PMID: 23684011.
      Citations: 38     Fields:    Translation:Humans
    36. Brisson D, Zhou W, Jutras BL, Casjens S, Stevenson B. Distribution of cp32 prophages among Lyme disease-causing spirochetes and natural diversity of their lipoprotein-encoding erp loci. Appl Environ Microbiol. 2013 Jul; 79(13):4115-28. PMID: 23624478.
      Citations: 19     Fields:    Translation:Cells
    37. Verhagen J, Genolet R, Britton GJ, Stevenson BJ, Sabatos-Peyton CA, Dyson J, Luescher IF, Wraith DC. CTLA-4 controls the thymic development of both conventional and regulatory T cells through modulation of the TCR repertoire. Proc Natl Acad Sci U S A. 2013 Jan 15; 110(3):E221-30. PMID: 23267099.
      Citations: 24     Fields:    Translation:AnimalsCells
    38. Genolet R, Stevenson BJ, Farinelli L, Oster?s M, Luescher IF. Highly diverse TCRa chain repertoire of pre-immune CD8? T cells reveals new insights in gene recombination. EMBO J. 2012 Nov 05; 31(21):4247-8. PMID: 23128857.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    39. Valsesia A, Stevenson BJ, Waterworth D, Mooser V, Vollenweider P, Waeber G, Jongeneel CV, Beckmann JS, Kutalik Z, Bergmann S. Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort. BMC Genomics. 2012 Jun 15; 13:241. PMID: 22702538.
      Citations: 8     Fields:    Translation:Humans
    40. Jutras BL, Bowman A, Brissette CA, Adams CA, Verma A, Chenail AM, Stevenson B. EbfC (YbaB) is a new type of bacterial nucleoid-associated protein and a global regulator of gene expression in the Lyme disease spirochete. J Bacteriol. 2012 Jul; 194(13):3395-406. PMID: 22544270.
      Citations: 28     Fields:    Translation:Cells
    41. Genolet R, Stevenson BJ, Farinelli L, Oster?s M, Luescher IF. Highly diverse TCRa chain repertoire of pre-immune CD8? T cells reveals new insights in gene recombination. EMBO J. 2012 Apr 04; 31(7):1666-78. PMID: 22373576.
      Citations: 15     Fields:    Translation:AnimalsCells
    42. Nikolaev SI, Rimoldi D, Iseli C, Valsesia A, Robyr D, Gehrig C, Harshman K, Guipponi M, Bukach O, Zoete V, Michielin O, Muehlethaler K, Speiser D, Beckmann JS, Xenarios I, Halazonetis TD, Jongeneel CV, Stevenson BJ, Antonarakis SE. Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma. Nat Genet. 2011 Dec 25; 44(2):133-9. PMID: 22197931.
      Citations: 188     Fields:    Translation:HumansCells
    43. Hon GC, Hawkins RD, Caballero OL, Lo C, Lister R, Pelizzola M, Valsesia A, Ye Z, Kuan S, Edsall LE, Camargo AA, Stevenson BJ, Ecker JR, Bafna V, Strausberg RL, Simpson AJ, Ren B. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. Genome Res. 2012 Feb; 22(2):246-58. PMID: 22156296.
      Citations: 270     Fields:    Translation:HumansCells
    44. Valsesia A, Rimoldi D, Martinet D, Ibberson M, Benaglio P, Quadroni M, Waridel P, Gaillard M, Pidoux M, Rapin B, Rivolta C, Xenarios I, Simpson AJ, Antonarakis SE, Beckmann JS, Jongeneel CV, Iseli C, Stevenson BJ. Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma. PLoS One. 2011 Apr 08; 6(4):e18369. PMID: 21494657.
      Citations: 24     Fields:    Translation:HumansCells
    45. Caballero OL, Zhao Q, Rimoldi D, Stevenson BJ, Svobodov? S, Devalle S, R?hrig UF, Pagotto A, Michielin O, Speiser D, Wolchok JD, Liu C, Pejovic T, Odunsi K, Brasseur F, Van den Eynde BJ, Old LJ, Lu X, Cebon J, Strausberg RL, Simpson AJ. Frequent MAGE mutations in human melanoma. PLoS One. 2010 Sep 16; 5(9). PMID: 20862285.
      Citations: 15     Fields:    Translation:HumansCells
    46. Burns LH, Adams CA, Riley SP, Jutras BL, Bowman A, Chenail AM, Cooley AE, Haselhorst LA, Moore AM, Babb K, Fried MG, Stevenson B. BpaB, a novel protein encoded by the Lyme disease spirochete's cp32 prophages, binds to erp Operator 2 DNA. Nucleic Acids Res. 2010 Sep; 38(16):5443-55. PMID: 20421207.
      Citations: 21     Fields:    Translation:Cells
    47. Brissette CA, Bykowski T, Cooley AE, Bowman A, Stevenson B. Borrelia burgdorferi RevA antigen binds host fibronectin. Infect Immun. 2009 Jul; 77(7):2802-12. PMID: 19398540.
      Citations: 57     Fields:    Translation:AnimalsCells
    48. Evanoff DD, Lawrence JR, Huebner CF, Houchins JM, Stevenson BJ, Foguth AL, Carroll JB, Foulger SH. Copolymers of 2-(9H-carbazol-9-yl)ethyl 2-methylacrylate and 4-[5-(4-tert-butylphenyl)-1,3,4-oxadiazol-2-yl]phenyl 2-methylacrylate: correlating hole drift mobility and electronic structure calculations with electroluminescence. ACS Appl Mater Interfaces. 2009 Apr; 1(4):875-81. PMID: 20356014.
      Citations: 1     Fields:    
    49. Riley SP, Bykowski T, Cooley AE, Burns LH, Babb K, Brissette CA, Bowman A, Rotondi M, Miller MC, DeMoll E, Lim K, Fried MG, Stevenson B. Borrelia burgdorferi EbfC defines a newly-identified, widespread family of bacterial DNA-binding proteins. Nucleic Acids Res. 2009 Apr; 37(6):1973-83. PMID: 19208644.
      Citations: 26     Fields:    Translation:Cells
    50. Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL. Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line. Proc Natl Acad Sci U S A. 2009 Feb 10; 106(6):1886-91. PMID: 19181860.
      Citations: 64     Fields:    Translation:HumansCells
    51. Martin O, Valsesia A, Telenti A, Xenarios I, Stevenson BJ. AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context. Bioinformatics. 2009 Mar 01; 25(5):662-3. PMID: 19168913.
      Citations: 3     Fields:    
    52. Hofmann O, Caballero OL, Stevenson BJ, Chen YT, Cohen T, Chua R, Maher CA, Panji S, Schaefer U, Kruger A, Lehvaslaiho M, Carninci P, Hayashizaki Y, Jongeneel CV, Simpson AJ, Old LJ, Hide W. Genome-wide analysis of cancer/testis gene expression. Proc Natl Acad Sci U S A. 2008 Dec 23; 105(51):20422-7. PMID: 19088187.
      Citations: 173     Fields:    Translation:HumansCells
    53. Alves PM, L?vy N, Stevenson BJ, Bouzourene H, Theiler G, Bricard G, Viatte S, Ayyoub M, Vuilleumier H, Givel JC, Rimoldi D, Speiser DE, Jongeneel CV, Romero PJ, L?vy F. Identification of tumor-associated antigens by large-scale analysis of genes expressed in human colorectal cancer. Cancer Immun. 2008 Jun 27; 8:11. PMID: 18581998.
      Citations: 15     Fields:    Translation:HumansCells
    54. Sauvain MO, Dorr AP, Stevenson B, Quazzola A, Naef F, Wiznerowicz M, Sch?tz F, Jongeneel V, Duboule D, Spitz F, Trono D. Genotypic features of lentivirus transgenic mice. J Virol. 2008 Jul; 82(14):7111-9. PMID: 18463153.
      Citations: 18     Fields:    Translation:AnimalsCells
    55. Stevenson B, Choy HA, Pinne M, Rotondi ML, Miller MC, Demoll E, Kraiczy P, Cooley AE, Creamer TP, Suchard MA, Brissette CA, Verma A, Haake DA. Leptospira interrogans endostatin-like outer membrane proteins bind host fibronectin, laminin and regulators of complement. PLoS One. 2007 Nov 14; 2(11):e1188. PMID: 18000555.
      Citations: 94     Fields:    Translation:Cells
    56. Stevenson BJ, Iseli C, Panji S, Zahn-Zabal M, Hide W, Old LJ, Simpson AJ, Jongeneel CV. Rapid evolution of cancer/testis genes on the X chromosome. BMC Genomics. 2007 May 23; 8:129. PMID: 17521433.
      Citations: 46     Fields:    Translation:HumansAnimalsCellsCTClinical Trials
    57. Miller JC, Stevenson B. Borrelia burgdorferi erp genes are expressed at different levels within tissues of chronically infected mammalian hosts. Int J Med Microbiol. 2006 May; 296 Suppl 40:185-94. PMID: 16530008.
      Citations: 18     Fields:    Translation:AnimalsCells
    58. Grigoriadis A, Mackay A, Reis-Filho JS, Steele D, Iseli C, Stevenson BJ, Jongeneel CV, Valgeirsson H, Fenwick K, Iravani M, Leao M, Simpson AJ, Strausberg RL, Jat PS, Ashworth A, Neville AM, O'Hare MJ. Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data. Breast Cancer Res. 2006; 8(5):R56. PMID: 17014703.
      Citations: 72     Fields:    Translation:HumansCells
    59. Davies SJ, Pandit SA, Feeney A, Stevenson BJ, Kerwin RW, Nutt DJ, Marshall EJ, Boddington S, Lingford-Hughes A. Is there cognitive impairment in clinically 'healthy' abstinent alcohol dependence? Alcohol Alcohol. 2005 Nov-Dec; 40(6):498-503. PMID: 16186142.
      Citations: 35     Fields:    Translation:Humans
    60. Chen YT, Venditti CA, Theiler G, Stevenson BJ, Iseli C, Gure AO, Jongeneel CV, Old LJ, Simpson AJ. Identification of CT46/HORMAD1, an immunogenic cancer/testis antigen encoding a putative meiosis-related protein. Cancer Immun. 2005 Jul 07; 5:9. PMID: 15999985.
      Citations: 44     Fields:    Translation:HumansAnimalsCells
    61. Jongeneel CV, Delorenzi M, Iseli C, Zhou D, Haudenschild CD, Khrebtukova I, Kuznetsov D, Stevenson BJ, Strausberg RL, Simpson AJ, Vasicek TJ. An atlas of human gene expression from massively parallel signature sequencing (MPSS). Genome Res. 2005 Jul; 15(7):1007-14. PMID: 15998913.
      Citations: 84     Fields:    Translation:Humans
    62. Chen YT, Scanlan MJ, Venditti CA, Chua R, Theiler G, Stevenson BJ, Iseli C, Gure AO, Vasicek T, Strausberg RL, Jongeneel CV, Old LJ, Simpson AJ. Identification of cancer/testis-antigen genes by massively parallel signature sequencing. Proc Natl Acad Sci U S A. 2005 May 31; 102(22):7940-5. PMID: 15905330.
      Citations: 42     Fields:    Translation:HumansCells
    63. Sperisen P, Iseli C, Pagni M, Stevenson BJ, Bucher P, Jongeneel CV. trome, trEST and trGEN: databases of predicted protein sequences. Nucleic Acids Res. 2004 Jan 01; 32(Database issue):D509-11. PMID: 14681469.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    64. Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA, Dias Neto E, Grivet M, Gruber A, Guimaraes PE, Hide W, Iseli C, Jongeneel CV, Kelso J, Nagai MA, Ojopi EP, Osorio EC, Reis EM, Riggins GJ, Simpson AJ, de Souza S, Stevenson BJ, Strausberg RL, Tajara EH, Verjovski-Almeida S, Acencio ML, Bengtson MH, Bettoni F, Bodmer WF, Briones MR, Camargo LP, Cavenee W, Cerutti JM, Coelho Andrade LE, Costa dos Santos PC, Ramos Costa MC, da Silva IT, Est?cio MR, Sa Ferreira K, Furnari FB, Faria M, Galante PA, Guimaraes GS, Holanda AJ, Kimura ET, Leerkes MR, Lu X, Maciel RM, Martins EA, Massirer KB, Melo AS, Mestriner CA, Miracca EC, Miranda LL, Nobrega FG, Oliveira PS, Paquola AC, Pandolfi JR, Campos Pardini MI, Passetti F, Quackenbush J, Schnabel B, Sogayar MC, Souza JE, Valentini SR, Zaiats AC, Amaral EJ, Arnaldi LA, de Ara?jo AG, de Bessa SA, Bicknell DC, Ribeiro de Camaro ME, Carraro DM, Carrer H, Carvalho AF, Colin C, Costa F, Curcio C, Guerreiro da Silva ID, Pereira da Silva N, Dellamano M, El-Dorry H, Espreafico EM, Scattone Ferreira AJ, Ayres Ferreira C, Fortes MA, Gama AH, Giannella-Neto D, Giannella ML, Giorgi RR, Goldman GH, Goldman MH, Hackel C, Ho PL, Kimura EM, Kowalski LP, Krieger JE, Leite LC, Lopes A, Luna AM, Mackay A, Mari SK, Marques AA, Martins WK, Montagnini A, Mour?o Neto M, Nascimento AL, Neville AM, Nobrega MP, O'Hare MJ, Otsuka AY, Ruas de Melo AI, Paco-Larson ML, Guimar?es Pereira G, Pereira da Silva N, Pesquero JB, Pessoa JG, Rahal P, Rainho CA, Rodrigues V, Rogatto SR, Romano CM, Romeiro JG, Rossi BM, Rusticci M, Guerra de S? R, Sant' Anna SC, Sarmazo ML, Silva TC, Soares FA, Sonati Mde F, de Freitas Sousa J, Queiroz D, Valente V, Vettore AL, Villanova FE, Zago MA, Zalcberg H. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proc Natl Acad Sci U S A. 2003 Nov 11; 100(23):13418-23. PMID: 14593198.
      Citations: 45     Fields:    Translation:Humans
    65. Favre M, Butticaz C, Stevenson B, Jongeneel CV, Telenti A. High frequency of alternative splicing of human genes participating in the HIV-1 life cycle: a model using TSG101, betaTrCP, PPIA, INI1, NAF1, and PML. J Acquir Immune Defic Syndr. 2003 Oct 01; 34(2):127-33. PMID: 14526201.
      Citations: 8     Fields:    Translation:HumansCells
    66. Stevenson B, Miller JC. Intra- and interbacterial genetic exchange of Lyme disease spirochete erp genes generates sequence identity amidst diversity. J Mol Evol. 2003 Sep; 57(3):309-24. PMID: 14629041.
      Citations: 40     Fields:    Translation:HumansAnimalsCells
    67. Stevenson BJ, Iseli C, Beutler B, Jongeneel CV. Use of transcriptome data to unravel the fine structure of genes involved in sepsis. J Infect Dis. 2003 Jun 15; 187 Suppl 2:S308-14. PMID: 12792844.
      Citations: 7     Fields:    Translation:HumansCells
    68. Silva AP, Salim AC, Bulgarelli A, de Souza JE, Os?rio E, Caballero OL, Iseli C, Stevenson BJ, Jongeneel CV, de Souza SJ, Simpson AJ, Camargo AA. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. Gene. 2003 May 22; 310:49-57. PMID: 12801632.
      Citations: 2     Fields:    Translation:HumansCells
    69. Jongeneel CV, Iseli C, Stevenson BJ, Riggins GJ, Lal A, Mackay A, Harris RA, O'Hare MJ, Neville AM, Simpson AJ, Strausberg RL. Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing. Proc Natl Acad Sci U S A. 2003 Apr 15; 100(8):4702-5. PMID: 12671075.
      Citations: 47     Fields:    Translation:HumansCells
    70. Dermitzakis ET, Reymond A, Lyle R, Scamuffa N, Ucla C, Deutsch S, Stevenson BJ, Flegel V, Bucher P, Jongeneel CV, Antonarakis SE. Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature. 2002 Dec 05; 420(6915):578-82. PMID: 12466853.
      Citations: 92     Fields:    Translation:HumansAnimalsCells
    71. Stevenson B. Borrelia burgdorferi erp (ospE-related) gene sequences remain stable during mammalian infection. Infect Immun. 2002 Sep; 70(9):5307-11. PMID: 12183589.
      Citations: 12     Fields:    Translation:AnimalsCells
    72. Iseli C, Stevenson BJ, de Souza SJ, Samaia HB, Camargo AA, Buetow KH, Strausberg RL, Simpson AJ, Bucher P, Jongeneel CV. Long-range heterogeneity at the 3' ends of human mRNAs. Genome Res. 2002 Jul; 12(7):1068-74. PMID: 12097343.
      Citations: 42     Fields:    Translation:Humans
    73. Reymond A, Camargo AA, Deutsch S, Stevenson BJ, Parmigiani RB, Ucla C, Bettoni F, Rossier C, Lyle R, Guipponi M, de Souza S, Iseli C, Jongeneel CV, Bucher P, Simpson AJ, Antonarakis SE. Nineteen additional unpredicted transcripts from human chromosome 21. Genomics. 2002 Jun; 79(6):824-32. PMID: 12036297.
      Citations: 19     Fields:    Translation:HumansCells
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