Header Logo

Connection

Oliver Rando to Nucleosomes

Back to Details
This is a "connection" page, showing publications Oliver Rando has written about Nucleosomes.
Oliver Rando
Connection Strength
7.625
Nucleosomes
  1. Krietenstein N, Rando OJ. Mesoscale organization of the chromatin fiber. Curr Opin Genet Dev. 2020 04; 61:32-36.
    View in: PubMed
    Score: 0.612
  2. Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ. Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome. Nat Methods. 2016 Dec; 13(12):1009-1011.
    View in: PubMed
    Score: 0.479
  3. Hughes AL, Rando OJ. Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo. G3 (Bethesda). 2015 Jul 14; 5(9):1889-97.
    View in: PubMed
    Score: 0.440
  4. Hsieh TH, Weiner A, Lajoie B, Dekker J, Friedman N, Rando OJ. Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C. Cell. 2015 Jul 02; 162(1):108-19.
    View in: PubMed
    Score: 0.438
  5. Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ. High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm. Dev Cell. 2014 Jul 14; 30(1):11-22.
    View in: PubMed
    Score: 0.409
  6. Hughes AL, Rando OJ. Mechanisms underlying nucleosome positioning in vivo. Annu Rev Biophys. 2014; 43:41-63.
    View in: PubMed
    Score: 0.395
  7. Fazzio TG, Rando OJ. NURDs are required for diversity. EMBO J. 2012 May 11; 31(14):3036-7.
    View in: PubMed
    Score: 0.353
  8. Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ. Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res. 2011 Nov; 21(11):1851-62.
    View in: PubMed
    Score: 0.337
  9. Radman-Livaja M, Ruben G, Weiner A, Friedman N, Kamakaka R, Rando OJ. Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization. EMBO J. 2011 Mar 16; 30(6):1012-26.
    View in: PubMed
    Score: 0.324
  10. Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ. The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol. 2010 Jul 06; 8(7):e1000414.
    View in: PubMed
    Score: 0.310
  11. Rando OJ. Genome-wide mapping of nucleosomes in yeast. Methods Enzymol. 2010; 470:105-18.
    View in: PubMed
    Score: 0.303
  12. Hughes A, Rando OJ. Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC? J Biol. 2009; 8(11):96.
    View in: PubMed
    Score: 0.299
  13. Radman-Livaja M, Rando OJ. Nucleosome positioning: how is it established, and why does it matter? Dev Biol. 2010 Mar 15; 339(2):258-66.
    View in: PubMed
    Score: 0.288
  14. Rando OJ, Ahmad K. Rules and regulation in the primary structure of chromatin. Curr Opin Cell Biol. 2007 Jun; 19(3):250-6.
    View in: PubMed
    Score: 0.249
  15. Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. Dynamics of replication-independent histone turnover in budding yeast. Science. 2007 Mar 09; 315(5817):1405-8.
    View in: PubMed
    Score: 0.247
  16. Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ. Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol. 2005 Oct; 3(10):e328.
    View in: PubMed
    Score: 0.222
  17. Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ. Genome-scale identification of nucleosome positions in S. cerevisiae. Science. 2005 Jul 22; 309(5734):626-30.
    View in: PubMed
    Score: 0.219
  18. Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS, Parsi KM, Yang L, Maehr R, Mirny LA, Dekker J, Rando OJ. Ultrastructural Details of Mammalian Chromosome Architecture. Mol Cell. 2020 05 07; 78(3):554-565.e7.
    View in: PubMed
    Score: 0.152
  19. Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, M?ller CW, Kelleher NL, Friedman N, Bolon DN, Rando OJ, Kaufman PD. A synthetic biology approach to probing nucleosome symmetry. Elife. 2017 09 12; 6.
    View in: PubMed
    Score: 0.128
  20. Vasseur P, Tonazzini S, Ziane R, Camasses A, Rando OJ, Radman-Livaja M. Dynamics of Nucleosome Positioning Maturation following Genomic Replication. Cell Rep. 2016 09 06; 16(10):2651-2665.
    View in: PubMed
    Score: 0.119
  21. Friedman N, Rando OJ. Epigenomics and the structure of the living genome. Genome Res. 2015 Oct; 25(10):1482-90.
    View in: PubMed
    Score: 0.112
  22. Yildirim O, Hung JH, Cedeno RJ, Weng Z, Lengner CJ, Rando OJ. A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters. PLoS Genet. 2014 Aug; 10(8):e1004515.
    View in: PubMed
    Score: 0.103
  23. Watanabe S, Radman-Livaja M, Rando OJ, Peterson CL. A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme. Science. 2013 Apr 12; 340(6129):195-9.
    View in: PubMed
    Score: 0.094
  24. M?bius W, Osberg B, Tsankov AM, Rando OJ, Gerland U. Toward a unified physical model of nucleosome patterns flanking transcription start sites. Proc Natl Acad Sci U S A. 2013 Apr 02; 110(14):5719-24.
    View in: PubMed
    Score: 0.094
  25. Hughes AL, Jin Y, Rando OJ, Struhl K. A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Mol Cell. 2012 Oct 12; 48(1):5-15.
    View in: PubMed
    Score: 0.090
  26. Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ. Systematic dissection of roles for chromatin regulators in a yeast stress response. PLoS Biol. 2012; 10(7):e1001369.
    View in: PubMed
    Score: 0.090
  27. Radman-Livaja M, Quan TK, Valenzuela L, Armstrong JA, van Welsem T, Kim T, Lee LJ, Buratowski S, van Leeuwen F, Rando OJ, Hartzog GA. A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast. PLoS Genet. 2012; 8(7):e1002811.
    View in: PubMed
    Score: 0.089
  28. Rando OJ, Winston F. Chromatin and transcription in yeast. Genetics. 2012 Feb; 190(2):351-87.
    View in: PubMed
    Score: 0.087
  29. Rando OJ. Genome-wide measurement of histone H3 replacement dynamics in yeast. Methods Mol Biol. 2011; 759:41-60.
    View in: PubMed
    Score: 0.080
  30. Radman-Livaja M, Liu CL, Friedman N, Schreiber SL, Rando OJ. Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast. PLoS Genet. 2010 Feb 05; 6(2):e1000837.
    View in: PubMed
    Score: 0.075
  31. Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res. 2010 Jan; 20(1):90-100.
    View in: PubMed
    Score: 0.074
  32. Dennis JH, Fan HY, Reynolds SM, Yuan G, Meldrim JC, Richter DJ, Peterson DG, Rando OJ, Noble WS, Kingston RE. Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Res. 2007 Jun; 17(6):928-39.
    View in: PubMed
    Score: 0.063
  33. Rando OJ. Chromatin structure in the genomics era. Trends Genet. 2007 Feb; 23(2):67-73.
    View in: PubMed
    Score: 0.061
  34. Rege M, Subramanian V, Zhu C, Hsieh TH, Weiner A, Friedman N, Clauder-M?nster S, Steinmetz LM, Rando OJ, Boyer LA, Peterson CL. Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis. Cell Rep. 2015 Nov 24; 13(8):1610-22.
    View in: PubMed
    Score: 0.028
  35. Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG. Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF. Genes Dev. 2015 Feb 15; 29(4):362-78.
    View in: PubMed
    Score: 0.027
  36. Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res. 2012 Sep; 22(9):1798-812.
    View in: PubMed
    Score: 0.023
  37. Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, Rhind N. Genome-wide identification and characterization of replication origins by deep sequencing. Genome Biol. 2012 Apr 24; 13(4):R27.
    View in: PubMed
    Score: 0.022
  38. Radman-Livaja M, Verzijlbergen KF, Weiner A, van Welsem T, Friedman N, Rando OJ, van Leeuwen F. Patterns and mechanisms of ancestral histone protein inheritance in budding yeast. PLoS Biol. 2011 Jun; 9(6):e1001075.
    View in: PubMed
    Score: 0.021
  39. Papamichos-Chronakis M, Watanabe S, Rando OJ, Peterson CL. Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity. Cell. 2011 Jan 21; 144(2):200-13.
    View in: PubMed
    Score: 0.020
  40. Ivanovska I, Jacques P?, Rando OJ, Robert F, Winston F. Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Mol Cell Biol. 2011 Feb; 31(3):531-41.
    View in: PubMed
    Score: 0.020
  41. Whitehouse I, Rando OJ, Delrow J, Tsukiyama T. Chromatin remodelling at promoters suppresses antisense transcription. Nature. 2007 Dec 13; 450(7172):1031-5.
    View in: PubMed
    Score: 0.016
  42. Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell. 2005 Oct 21; 123(2):233-48.
    View in: PubMed
    Score: 0.014
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.