Header Logo

Connection

William Royer to Models, Molecular

This is a "connection" page, showing publications William Royer has written about Models, Molecular.
Connection Strength

1.776
  1. Knapp JE, Pahl R, Cohen J, Nichols JC, Schulten K, Gibson QH, Srajer V, Royer WE. Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis. Structure. 2009 Nov 11; 17(11):1494-504.
    View in: PubMed
    Score: 0.249
  2. Knapp JE, Royer WE. Ligand-linked structural transitions in crystals of a cooperative dimeric hemoglobin. Biochemistry. 2003 Apr 29; 42(16):4640-7.
    View in: PubMed
    Score: 0.159
  3. Nichols JC, Schiffer CA, Royer WE. NAD(H) phosphates mediate tetramer assembly of human C-terminal binding protein (CtBP). J Biol Chem. 2021 Jan-Jun; 296:100351.
    View in: PubMed
    Score: 0.136
  4. Bellesis AG, Jecrois AM, Hayes JA, Schiffer CA, Royer WE. Assembly of human C-terminal binding protein (CtBP) into tetramers. J Biol Chem. 2018 06 08; 293(23):9101-9112.
    View in: PubMed
    Score: 0.112
  5. Hilbert BJ, Morris BL, Ellis KC, Paulsen JL, Schiffer CA, Grossman SR, Royer WE. Structure-guided design of a high affinity inhibitor to human CtBP. ACS Chem Biol. 2015 Apr 17; 10(4):1118-27.
    View in: PubMed
    Score: 0.090
  6. Hilbert BJ, Grossman SR, Schiffer CA, Royer WE. Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design. FEBS Lett. 2014 May 02; 588(9):1743-8.
    View in: PubMed
    Score: 0.084
  7. Ren Z, Srajer V, Knapp JE, Royer WE. Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures. Proc Natl Acad Sci U S A. 2012 Jan 03; 109(1):107-12.
    View in: PubMed
    Score: 0.072
  8. Chen W, Royer WE. Structural insights into interferon regulatory factor activation. Cell Signal. 2010 Jun; 22(6):883-7.
    View in: PubMed
    Score: 0.063
  9. Chen W, Lam SS, Srinath H, Jiang Z, Correia JJ, Schiffer CA, Fitzgerald KA, Lin K, Royer WE. Insights into interferon regulatory factor activation from the crystal structure of dimeric IRF5. Nat Struct Mol Biol. 2008 Nov; 15(11):1213-20.
    View in: PubMed
    Score: 0.058
  10. Srajer V, Royer WE. Time-resolved x-ray crystallography of heme proteins. Methods Enzymol. 2008; 437:379-95.
    View in: PubMed
    Score: 0.055
  11. Royer WE, Omartian MN, Knapp JE. Low resolution crystal structure of Arenicola erythrocruorin: influence of coiled coils on the architecture of a megadalton respiratory protein. J Mol Biol. 2007 Jan 05; 365(1):226-36.
    View in: PubMed
    Score: 0.050
  12. Knapp JE, Pahl R, Srajer V, Royer WE. Allosteric action in real time: time-resolved crystallographic studies of a cooperative dimeric hemoglobin. Proc Natl Acad Sci U S A. 2006 May 16; 103(20):7649-54.
    View in: PubMed
    Score: 0.049
  13. Knapp JE, Bonham MA, Gibson QH, Nichols JC, Royer WE. Residue F4 plays a key role in modulating oxygen affinity and cooperativity in Scapharca dimeric hemoglobin. Biochemistry. 2005 Nov 08; 44(44):14419-30.
    View in: PubMed
    Score: 0.047
  14. Strand K, Knapp JE, Bhyravbhatla B, Royer WE. Crystal structure of the hemoglobin dodecamer from Lumbricus erythrocruorin: allosteric core of giant annelid respiratory complexes. J Mol Biol. 2004 Nov 12; 344(1):119-34.
    View in: PubMed
    Score: 0.044
  15. Knapp JE, Gibson QH, Cushing L, Royer WE. Restricting the ligand-linked heme movement in Scapharca dimeric hemoglobin reveals tight coupling between distal and proximal contributions to cooperativity. Biochemistry. 2001 Dec 11; 40(49):14795-805.
    View in: PubMed
    Score: 0.036
  16. Royer WE, Knapp JE, Strand K, Heaslet HA. Cooperative hemoglobins: conserved fold, diverse quaternary assemblies and allosteric mechanisms. Trends Biochem Sci. 2001 May; 26(5):297-304.
    View in: PubMed
    Score: 0.035
  17. Lockbaum GJ, Leidner F, Royer WE, Kurt Yilmaz N, Schiffer CA. Optimizing the refinement of merohedrally twinned P61 HIV-1 protease-inhibitor cocrystal structures. Acta Crystallogr D Struct Biol. 2020 Mar 01; 76(Pt 3):302-310.
    View in: PubMed
    Score: 0.032
  18. Heaslet HA, Royer WE. The 2.7 A crystal structure of deoxygenated hemoglobin from the sea lamprey (Petromyzon marinus): structural basis for a lowered oxygen affinity and Bohr effect. Structure. 1999 May; 7(5):517-26.
    View in: PubMed
    Score: 0.030
  19. Pardanani A, Gambacurta A, Ascoli F, Royer WE. Mutational destabilization of the critical interface water cluster in Scapharca dimeric hemoglobin: structural basis for altered allosteric activity. J Mol Biol. 1998 Dec 04; 284(3):729-39.
    View in: PubMed
    Score: 0.029
  20. Harrington DJ, Adachi K, Royer WE. Crystal structure of deoxy-human hemoglobin beta6 Glu --> Trp. Implications for the structure and formation of the sickle cell fiber. J Biol Chem. 1998 Dec 04; 273(49):32690-6.
    View in: PubMed
    Score: 0.029
  21. Harrington DJ, Adachi K, Royer WE. The high resolution crystal structure of deoxyhemoglobin S. J Mol Biol. 1997 Sep 26; 272(3):398-407.
    View in: PubMed
    Score: 0.027
  22. Kouno T, Silvas TV, Hilbert BJ, Shandilya SMD, Bohn MF, Kelch BA, Royer WE, Somasundaran M, Kurt Yilmaz N, Matsuo H, Schiffer CA. Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity. Nat Commun. 2017 04 28; 8:15024.
    View in: PubMed
    Score: 0.026
  23. Royer WE, Fox RA, Smith FR, Zhu D, Braswell EH. Ligand linked assembly of Scapharca dimeric hemoglobin. J Biol Chem. 1997 Feb 28; 272(9):5689-94.
    View in: PubMed
    Score: 0.026
  24. Korwar S, Morris BL, Parikh HI, Coover RA, Doughty TW, Love IM, Hilbert BJ, Royer WE, Kellogg GE, Grossman SR, Ellis KC. Design, synthesis, and biological evaluation of substrate-competitive inhibitors of C-terminal Binding Protein (CtBP). Bioorg Med Chem. 2016 06 15; 24(12):2707-15.
    View in: PubMed
    Score: 0.024
  25. Royer WE, Heard KS, Harrington DJ, Chiancone E. The 2.0 A crystal structure of Scapharca tetrameric hemoglobin: cooperative dimers within an allosteric tetramer. J Mol Biol. 1995 Oct 13; 253(1):168-86.
    View in: PubMed
    Score: 0.023
  26. Condon PJ, Royer WE. Crystal structure of oxygenated Scapharca dimeric hemoglobin at 1.7-A resolution. J Biol Chem. 1994 Oct 14; 269(41):25259-67.
    View in: PubMed
    Score: 0.022
  27. Royer WE. High-resolution crystallographic analysis of a co-operative dimeric hemoglobin. J Mol Biol. 1994 Jan 14; 235(2):657-81.
    View in: PubMed
    Score: 0.021
  28. Ronda L, Bettati S, Henry ER, Kashav T, Sanders JM, Royer WE, Mozzarelli A. Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis. Biochemistry. 2013 Mar 26; 52(12):2108-17.
    View in: PubMed
    Score: 0.020
  29. Royer WE, Hendrickson WA, Chiancone E. Structural transitions upon ligand binding in a cooperative dimeric hemoglobin. Science. 1990 Aug 03; 249(4968):518-21.
    View in: PubMed
    Score: 0.016
  30. Shandilya SM, Nalam MN, Nalivaika EA, Gross PJ, Valesano JC, Shindo K, Li M, Munson M, Royer WE, Harjes E, Kono T, Matsuo H, Harris RS, Somasundaran M, Schiffer CA. Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces. Structure. 2010 Jan 13; 18(1):28-38.
    View in: PubMed
    Score: 0.016
  31. Royer WE, Hendrickson WA, Chiancone E. The 2.4-A crystal structure of Scapharca dimeric hemoglobin. Cooperativity based on directly communicating hemes at a novel subunit interface. J Biol Chem. 1989 Dec 15; 264(35):21052-61.
    View in: PubMed
    Score: 0.016
  32. Chen W, Srinath H, Lam SS, Schiffer CA, Royer WE, Lin K. Contribution of Ser386 and Ser396 to activation of interferon regulatory factor 3. J Mol Biol. 2008 May 30; 379(2):251-60.
    View in: PubMed
    Score: 0.014
  33. Nienhaus K, Knapp JE, Palladino P, Royer WE, Nienhaus GU. Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis. Biochemistry. 2007 Dec 11; 46(49):14018-31.
    View in: PubMed
    Score: 0.014
  34. Chen W, Lam SS, Srinath H, Schiffer CA, Royer WE, Lin K. Competition between Ski and CREB-binding protein for binding to Smad proteins in transforming growth factor-beta signaling. J Biol Chem. 2007 Apr 13; 282(15):11365-76.
    View in: PubMed
    Score: 0.013
  35. Hendrickson WA, Royer WE. Principles in the assembly of annelid erythrocruorins. Biophys J. 1986 Jan; 49(1):177-89.
    View in: PubMed
    Score: 0.012
  36. Royer WE, Love WE, Fenderson FF. Cooperative dimeric and tetrameric clam haemoglobins are novel assemblages of myoglobin folds. Nature. 1985 Jul 18-24; 316(6025):277-80.
    View in: PubMed
    Score: 0.012
  37. Richardson RC, King NM, Harrington DJ, Sun H, Royer WE, Nelson DJ. X-Ray crystal structure and molecular dynamics simulations of silver hake parvalbumin (Isoform B). Protein Sci. 2000 Jan; 9(1):73-82.
    View in: PubMed
    Score: 0.008
  38. Chiancone E, Elber R, Royer WE, Regan R, Gibson QH. Ligand binding and conformation change in the dimeric hemoglobin of the clam Scapharca inaequivalvis. J Biol Chem. 1993 Mar 15; 268(8):5711-8.
    View in: PubMed
    Score: 0.005
  39. Chiancone E, Verzili D, Boffi A, Royer WE, Hendrickson WA. A cooperative hemoglobin with directly communicating hemes. The Scapharca inaequivalvis homodimer. Biophys Chem. 1990 Aug 31; 37(1-3):287-92.
    View in: PubMed
    Score: 0.004
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.