Nikolaus Grigorieff to Image Processing, Computer-Assisted
This is a "connection" page, showing publications Nikolaus Grigorieff has written about Image Processing, Computer-Assisted.
Connection Strength
6.766
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Kong L, Zottig X, Elferich J, Grigorieff N. Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model. Elife. 2026 Apr 30; 14.
Score: 0.722
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Zhang K, Cossio P, Rangan AV, Lucas BA, Grigorieff N. A new statistical metric for robust target detection in cryo-EM using 2D template matching. IUCrJ. 2025 03 01; 12(Pt 2):155-176.
Score: 0.666
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Elferich J, Kong L, Zottig X, Grigorieff N. CTFFIND5 provides improved insight into quality, tilt, and thickness of TEM samples. Elife. 2024 Dec 20; 13.
Score: 0.657
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Lucas BA, Himes BA, Grigorieff N. Baited reconstruction with 2D template matching for high-resolution structure determination in vitro and in vivo without template bias. Elife. 2023 11 27; 12.
Score: 0.611
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Grant T, Rohou A, Grigorieff N. cisTEM, user-friendly software for single-particle image processing. Elife. 2018 03 07; 7.
Score: 0.411
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Grigorieff N. Frealign: An Exploratory Tool for Single-Particle Cryo-EM. Methods Enzymol. 2016; 579:191-226.
Score: 0.364
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Grant T, Grigorieff N. Measuring the optimal exposure for single particle cryo-EM using a 2.6 ? reconstruction of rotavirus VP6. Elife. 2015 May 29; 4:e06980.
Score: 0.339
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Ruskin AI, Yu Z, Grigorieff N. Quantitative characterization of electron detectors for transmission electron microscopy. J Struct Biol. 2013 12; 184(3):385-93.
Score: 0.304
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Lyumkis D, Brilot AF, Theobald DL, Grigorieff N. Likelihood-based classification of cryo-EM images using FREALIGN. J Struct Biol. 2013 Sep; 183(3):377-388.
Score: 0.298
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Grigorieff N, Harrison SC. Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy. Curr Opin Struct Biol. 2011 Apr; 21(2):265-73.
Score: 0.252
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Chen JZ, Sachse C, Xu C, Mielke T, Spahn CM, Grigorieff N. A dose-rate effect in single-particle electron microscopy. J Struct Biol. 2008 Jan; 161(1):92-100.
Score: 0.199
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Zeng X, Stahlberg H, Grigorieff N. A maximum likelihood approach to two-dimensional crystals. J Struct Biol. 2007 Dec; 160(3):362-74.
Score: 0.199
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Elferich J, Kaminek M, Kong L, Odriozola A, Kukulski W, Zuber B, Grigorieff N. In situ high-resolution cryo-EM reconstructions from CEMOVIS. IUCrJ. 2025 07 01; 12(Pt 4):502-510.
Score: 0.170
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Dingeldein L, Silva-S?nchez D, Evans L, D'Imprima E, Grigorieff N, Covino R, Cossio P. Amortized template matching of molecular conformations from cryoelectron microscopy images using simulation-based inference. Proc Natl Acad Sci U S A. 2025 Jun 10; 122(23):e2420158122.
Score: 0.170
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Woollard G, Zhou W, Thiede EH, Lin C, Grigorieff N, Cossio P, Dao Duc K, Hanson SM. InstaMap: instant-NGP for cryo-EM density maps. Acta Crystallogr D Struct Biol. 2025 Apr 01; 81(Pt 4):147-169.
Score: 0.167
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Stewart A, Grigorieff N. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy. 2004 Dec; 102(1):67-84.
Score: 0.164
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Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N. Locating macromolecular assemblies in cells by 2D template matching with cisTEM. Elife. 2021 06 11; 10.
Score: 0.129
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Rickgauer JP, Grigorieff N, Denk W. Single-protein detection in crowded molecular environments in cryo-EM images. Elife. 2017 05 03; 6.
Score: 0.097
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Schmidt M, Rohou A, Lasker K, Yadav JK, Schiene-Fischer C, F?ndrich M, Grigorieff N. Peptide dimer structure in an A?(1-42) fibril visualized with cryo-EM. Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38):11858-63.
Score: 0.086
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Chiu PL, Li X, Li Z, Beckett B, Brilot AF, Grigorieff N, Agard DA, Cheng Y, Walz T. Evaluation of super-resolution performance of the K2 electron-counting camera using 2D crystals of aquaporin-0. J Struct Biol. 2015 Nov; 192(2):163-73.
Score: 0.086
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Grigorieff N. Direct detection pays off for electron cryo-microscopy. Elife. 2013 Feb 19; 2:e00573.
Score: 0.072
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Brilot AF, Chen JZ, Cheng A, Pan J, Harrison SC, Potter CS, Carragher B, Henderson R, Grigorieff N. Beam-induced motion of vitrified specimen on holey carbon film. J Struct Biol. 2012 Mar; 177(3):630-7.
Score: 0.067
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Henderson R, Chen S, Chen JZ, Grigorieff N, Passmore LA, Ciccarelli L, Rubinstein JL, Crowther RA, Stewart PL, Rosenthal PB. Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy. J Mol Biol. 2011 Nov 11; 413(5):1028-46.
Score: 0.065
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Sindelar CV, Grigorieff N. An adaptation of the Wiener filter suitable for analyzing images of isolated single particles. J Struct Biol. 2011 Oct; 176(1):60-74.
Score: 0.065
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Li X, Grigorieff N, Cheng Y. GPU-enabled FREALIGN: accelerating single particle 3D reconstruction and refinement in Fourier space on graphics processors. J Struct Biol. 2010 Dec; 172(3):407-12.
Score: 0.060
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Schmidt M, Sachse C, Richter W, Xu C, F?ndrich M, Grigorieff N. Comparison of Alzheimer Abeta(1-40) and Abeta(1-42) amyloid fibrils reveals similar protofilament structures. Proc Natl Acad Sci U S A. 2009 Nov 24; 106(47):19813-8.
Score: 0.057
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Kim LA, Furst J, Gutierrez D, Butler MH, Xu S, Goldstein SA, Grigorieff N. Three-dimensional structure of I(to); Kv4.2-KChIP2 ion channels by electron microscopy at 21 Angstrom resolution. Neuron. 2004 Feb 19; 41(4):513-9.
Score: 0.039
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Mindell JA, Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol. 2003 Jun; 142(3):334-47.
Score: 0.037
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Nogales E, Grigorieff N. Molecular Machines: putting the pieces together. J Cell Biol. 2001 Jan 08; 152(1):F1-10.
Score: 0.031
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Song K, Shang Z, Fu X, Lou X, Grigorieff N, Nicastro D. In situ structure determination at nanometer resolution using TYGRESS. Nat Methods. 2020 02; 17(2):201-208.
Score: 0.029
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Zhang C, Cantara W, Jeon Y, Musier-Forsyth K, Grigorieff N, Lyumkis D. Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification. Ultramicroscopy. 2019 08; 203:170-180.
Score: 0.027
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Grigorieff N. Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice. J Mol Biol. 1998 Apr 17; 277(5):1033-46.
Score: 0.026
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Abeyrathne PD, Koh CS, Grant T, Grigorieff N, Korostelev AA. Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome. Elife. 2016 05 09; 5.
Score: 0.023
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Cheng Y, Grigorieff N, Penczek PA, Walz T. A primer to single-particle cryo-electron microscopy. Cell. 2015 Apr 23; 161(3):438-449.
Score: 0.021
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Svidritskiy E, Brilot AF, Koh CS, Grigorieff N, Korostelev AA. Structures of yeast 80S ribosome-tRNA complexes in the rotated and nonrotated conformations. Structure. 2014 Aug 05; 22(8):1210-1218.
Score: 0.020
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Estrozi LF, Settembre EC, Goret G, McClain B, Zhang X, Chen JZ, Grigorieff N, Harrison SC. Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles. J Mol Biol. 2013 Jan 09; 425(1):124-32.
Score: 0.018
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Fotin A, Kirchhausen T, Grigorieff N, Harrison SC, Walz T, Cheng Y. Structure determination of clathrin coats to subnanometer resolution by single particle cryo-electron microscopy. J Struct Biol. 2006 Dec; 156(3):453-60.
Score: 0.011
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Smith CJ, Grigorieff N, Pearse BM. Clathrin coats at 21 A resolution: a cellular assembly designed to recycle multiple membrane receptors. EMBO J. 1998 Sep 01; 17(17):4943-53.
Score: 0.007