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David N Kennedy PhD

TitleProfessor
InstitutionUniversity of Massachusetts Medical School
DepartmentPsychiatry
AddressUniversity of Massachusetts Medical School
365 Plantation Street, Biotech One
Worcester MA 01605
Phone508-856-8228
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    Other Positions
    InstitutionUMMS - School of Medicine
    DepartmentNeuroNexus Institute

    InstitutionUMMS - School of Medicine
    DepartmentPsychiatry

    InstitutionUMMS - Graduate School of Biomedical Sciences
    DepartmentMD/PhD Program

    InstitutionUMMS - Graduate School of Biomedical Sciences
    DepartmentNeuroscience


    Collapse Biography 
    Collapse education and training
    Massachusetts Institute of Technology, Cambridge, MA, United StatesPHDNuclear Engineering

    Collapse Overview 
    Collapse overview

    Neuroimaging and Neuroinformatics

    Dr. David KennedyDr. Kennedy is a Professor of Psychiatry at the University of Massachusetts Medical School. He is Director of the Division of Neuroinformatics at the Child and Adolescent Neurodevelopment Initiative (CANDI). He has extensive expertise in the development of image analysis techniques and was a co-founder of the Center for Morphometric Analysis (CMA) at the Massachusetts General Hospital. His career has seen participation in the advent of such technologies as MRI-based morphometric analysis (1989), functional MRI (1991) and diffusion tensor pathway analysis (1998). He has long standing experience with development of neuroinformatics resources (Internet Brain Volumetric Database, Internet Brain Segmentation Repository, Internet Analysis Tools Registry), and participated as co-PI (PI: Bruce Rosen) of the morphometry Biomedical Informatics Research Network (mBIRN). Dr. Kennedy is the community liaison for the Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). In addition, he is a founding editor of the journal Neuroinformatics that debuted in 2003.




    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Fenner M, Crosas M, Grethe JS, Kennedy D, Hermjakob H, Rocca-Serra P, Durand G, Berjon R, Karcher S, Martone M, Clark T. A data citation roadmap for scholarly data repositories. Sci Data. 2019 Apr 10; 6(1):28. PMID: 30971690.
      View in: PubMed
    2. Zhu F, Liu Y, Liu F, Yang R, Li H, Chen J, Kennedy DN, Zhao J, Guo W. Functional asymmetry of thalamocortical networks in subjects at ultra-high risk for psychosis and first-episode schizophrenia. Eur Neuropsychopharmacol. 2019 Feb 12. PMID: 30770234.
      View in: PubMed
    3. Kennedy DN, Abraham SA, Bates JF, Crowley A, Ghosh S, Gillespie T, Goncalves M, Grethe JS, Halchenko YO, Hanke M, Haselgrove C, Hodge SM, Jarecka D, Kaczmarzyk J, Keator DB, Meyer K, Martone ME, Padhy S, Poline JB, Preuss N, Sincomb T, Travers M. Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging. Front Neuroinform. 2019; 13:1. PMID: 30792636.
      View in: PubMed
    4. Fitzpatrick P, Mitchell T, Schmidt RC, Kennedy D, Frazier JA. Alpha band signatures of social synchrony. Neurosci Lett. 2019 Jan 23; 699:24-30. PMID: 30684678.
      View in: PubMed
    5. Dudovitz RN, Chung PJ, Reber S, Kennedy D, Tucker JS, Shoptaw S, Dosanjh KK, Wong MD. Assessment of Exposure to High-Performing Schools and Risk of Adolescent Substance Use: A Natural Experiment. JAMA Pediatr. 2018 Oct 29. PMID: 30383092.
      View in: PubMed
    6. Kennedy DN. Neuroimaging Neuroinformatics: Sample Size and Other Evolutionary Topics. Neuroinformatics. 2018 Apr; 16(2):149-150. PMID: 29704208.
      View in: PubMed
    7. Gorgolewski KJ, Nichols T, Kennedy DN, Poline JB, Poldrack RA. Making replication prestigious. Behav Brain Sci. 2018 Jan; 41:e131. PMID: 31064546.
      View in: PubMed
    8. James EG, Leveille SG, Hausdorff JM, Barton B, Cote S, Karabulut M, Conatser P, Kennedy DN, Tucker KL, Al Snih S, Markides KS, Bean JF. Coordination Impairments Are Associated With Falling Among Older Adults. Exp Aging Res. 2017 Oct-Dec; 43(5):430-439. PMID: 29072539.
      View in: PubMed
    9. James EG, Leveille SG, Hausdorff JM, Travison T, Cote S, Conatser P, Karabulut M, Mendes AC, Kennedy DN, Tucker KL, Al Snih S, Markides KS, Bean JF. Rhythmic Interlimb Coordination Impairments Are Associated With Mobility Limitations Among Older Adults. Exp Aging Res. 2017 Jul-Sep; 43(4):337-345. PMID: 28718754.
      View in: PubMed
    10. Irimia A, Wei S, Lu N, Moore CM, Kennedy DN. Mobile Monitoring of Traumatic Brain Injury in Older Adults: Challenges and Opportunities. Neuroinformatics. 2017 Jul; 15(3):227-230. PMID: 28748392.
      View in: PubMed
    11. Kennedy DN. The Information Sharing Statement Grows Some Teeth. Neuroinformatics. 2017 May 13. PMID: 28500465.
      View in: PubMed
    12. Ghosh SS, Poline JB, Keator DB, Halchenko YO, Thomas AG, Kessler DA, Kennedy DN. A very simple, re-executable neuroimaging publication. F1000Res. 2017; 6:124. PMID: 28781753.
      View in: PubMed
    13. Pang L, Kennedy D, Wei Q, Lv L, Gao J, Li H, Quan M, Li X, Yang Y, Fan X, Song X. Decreased Functional Connectivity of Insular Cortex in Drug Naïve First Episode Schizophrenia: In Relation to Symptom Severity. PLoS One. 2017; 12(1):e0167242. PMID: 28107346.
      View in: PubMed
    14. James EG, Leveille SG, Hausdorff JM, Travison T, Kennedy DN, Tucker KL, Al Snih S, Markides KS, Bean JF. Rhythmic Interlimb Coordination Impairments and the Risk for Developing Mobility Limitations. J Gerontol A Biol Sci Med Sci. 2016 Dec 07. PMID: 27927763.
      View in: PubMed
    15. Honor LB, Haselgrove C, Frazier JA, Kennedy DN. Corrigendum: Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. Front Neuroinform. 2016; 10:43. PMID: 27708574.
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    16. Bromley E, Kennedy D, Miranda J, Sherbourne CD, Wells KB. The Fracture of Relational Space in Depression: Predicaments in Primary Care Help Seeking. Curr Anthropol. 2016 Oct; 57(5):610-631. PMID: 27990025.
      View in: PubMed
    17. Honor LB, Haselgrove C, Frazier JA, Kennedy DN. Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. Front Neuroinform. 2016; 10:34. PMID: 27570508.
      View in: PubMed
    18. Chang L, Douet V, Bloss C, Lee K, Pritchett A, Jernigan TL, Akshoomoff N, Murray SS, Frazier J, Kennedy DN, Amaral DG, Gruen J, Kaufmann WE, Casey BJ, Sowell E, Ernst T. Gray matter maturation and cognition in children with different APOE e genotypes. Neurology. 2016 Aug 09; 87(6):585-94. PMID: 27412137.
      View in: PubMed
    19. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics. 2016 Apr; 14(2):169-82. PMID: 26589523.
      View in: PubMed
    20. Kennedy DN. The Social Life of Data. Neuroinformatics. 2016 Apr; 14(2):129-30. PMID: 26942593.
      View in: PubMed
    21. Eicher JD, Montgomery AM, Akshoomoff N, Amaral DG, Bloss CS, Libiger O, Schork NJ, Darst BF, Casey BJ, Chang L, Ernst T, Frazier J, Kaufmann WE, Keating B, Kenet T, Kennedy D, Mostofsky S, Murray SS, Sowell ER, Bartsch H, Kuperman JM, Brown TT, Hagler DJ, Dale AM, Jernigan TL, Gruen JR. Dyslexia and language impairment associated genetic markers influence cortical thickness and white matter in typically developing children. Brain Imaging Behav. 2016 Mar; 10(1):272-82. PMID: 25953057.
      View in: PubMed
    22. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A Cultural Shift in Publishing. J Comp Neurol. 2016 Jan 01; 524(1):8-22. PMID: 26599696.
      View in: PubMed
    23. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: a cultural shift in publishing. Brain Behav. 2016 Jan; 6(1):e00417. PMID: 27110440.
      View in: PubMed
    24. Kennedy DN. The Dark Matter of the Bibliome. Neuroinformatics. 2015 Oct; 13(4):387-9. PMID: 26490570.
      View in: PubMed
    25. Newman E, Thompson WK, Bartsch H, Hagler DJ, Chen CH, Brown TT, Kuperman JM, McCabe C, Chung Y, Libiger O, Akshoomoff N, Bloss CS, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Kennedy DN, Murray SS, Sowell ER, Schork N, Kenet T, Kaufmann WE, Mostofsky S, Amaral DG, Dale AM, Jernigan TL. Anxiety is related to indices of cortical maturation in typically developing children and adolescents. Brain Struct Funct. 2016 Jul; 221(6):3013-25. PMID: 26183468.
      View in: PubMed
    26. Kennedy DN, Haselgrove C, Riehl J, Preuss N, Buccigrossi R. The Three NITRCs: A Guide to Neuroimaging Neuroinformatics Resources. Neuroinformatics. 2015 Jul; 13(3):383-6. PMID: 25700675.
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    27. Rane P, Cochran D, Hodge SM, Haselgrove C, Kennedy DN, Frazier JA. Connectivity in Autism: A Review of MRI Connectivity Studies. Harv Rev Psychiatry. 2015 Jul-Aug; 23(4):223-44. PMID: 26146755.
      View in: PubMed
    28. Kennedy DN, Haselgrove C, Riehl J, Preuss N, Buccigrossi R. The NITRC image repository. Neuroimage. 2016 Jan 01; 124(Pt B):1069-73. PMID: 26044860.
      View in: PubMed
    29. Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing. F1000Res. 2015; 4:134. PMID: 26594330.
      View in: PubMed
    30. Jernigan TL, Brown TT, Hagler DJ, Akshoomoff N, Bartsch H, Newman E, Thompson WK, Bloss CS, Murray SS, Schork N, Kennedy DN, Kuperman JM, McCabe C, Chung Y, Libiger O, Maddox M, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Sowell ER, Kenet T, Kaufmann WE, Mostofsky S, Amaral DG, Dale AM. The Pediatric Imaging, Neurocognition, and Genetics (PING) Data Repository. Neuroimage. 2016 Jan 01; 124(Pt B):1149-54. PMID: 25937488.
      View in: PubMed
    31. Cochran DM, Sikoglu EM, Hodge SM, Edden RA, Foley A, Kennedy DN, Moore CM, Frazier JA. Relationship among Glutamine, ?-Aminobutyric Acid, and Social Cognition in Autism Spectrum Disorders. J Child Adolesc Psychopharmacol. 2015 May; 25(4):314-22. PMID: 25919578.
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    32. Du J, Quan M, Zhuang W, Zhong N, Jiang H, Kennedy DN, Harrington A, Ziedonis D, Fan X, Zhao M. Hippocampal volume reduction in female but not male recent abstinent methamphetamine users. Behav Brain Res. 2015 Aug 1; 289:78-83. PMID: 25920682.
      View in: PubMed
    33. Noble KG, Houston SM, Brito NH, Bartsch H, Kan E, Kuperman JM, Akshoomoff N, Amaral DG, Bloss CS, Libiger O, Schork NJ, Murray SS, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Kennedy DN, Van Zijl P, Mostofsky S, Kaufmann WE, Kenet T, Dale AM, Jernigan TL, Sowell ER. Family income, parental education and brain structure in children and adolescents. Nat Neurosci. 2015 May; 18(5):773-8. PMID: 25821911.
      View in: PubMed
    34. Torgerson CM, Quinn C, Dinov I, Liu Z, Petrosyan P, Pelphrey K, Haselgrove C, Kennedy DN, Toga AW, Van Horn JD. Interacting with the National Database for Autism Research (NDAR) via the LONI Pipeline workflow environment. Brain Imaging Behav. 2015 Mar; 9(1):89-103. PMID: 25666423.
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    35. Leroy F, Cai Q, Bogart SL, Dubois J, Coulon O, Monzalvo K, Fischer C, Glasel H, Van der Haegen L, Bénézit A, Lin CP, Kennedy DN, Ihara AS, Hertz-Pannier L, Moutard ML, Poupon C, Brysbaert M, Roberts N, Hopkins WD, Mangin JF, Dehaene-Lambertz G. New human-specific brain landmark: the depth asymmetry of superior temporal sulcus. Proc Natl Acad Sci U S A. 2015 Jan 27; 112(4):1208-13. PMID: 25583500.
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    36. Izquierdo A, Miranda J, Bromley E, Sherbourne C, Ryan G, Kennedy D, Wells K. Grandparenting experiences among adults with a history of depression: a mixed-methods study. Gen Hosp Psychiatry. 2015 Mar-Apr; 37(2):185-91. PMID: 25680755.
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    37. Haselgrove C, Poline JB, Kennedy DN. Comment on "A simple tool for neuroimaging data sharing". Front Neuroinform. 2014; 8:82. PMID: 25400576.
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    38. Song X, Quan M, Lv L, Li X, Pang L, Kennedy D, Hodge S, Harrington A, Ziedonis D, Fan X. Decreased cortical thickness in drug naïve first episode schizophrenia: in relation to serum levels of BDNF. J Psychiatr Res. 2015 Jan; 60:22-8. PMID: 25282282.
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    39. Song X, Fan X, Li X, Kennedy D, Pang L, Quan M, Chen X, Gao J, Zhang W, Zhang J, Lv L. Serum levels of BDNF, folate and homocysteine: in relation to hippocampal volume and psychopathology in drug naïve, first episode schizophrenia. Schizophr Res. 2014 Oct; 159(1):51-5. PMID: 25128453.
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    40. Akyuz N, Kekatpure MV, Liu J, Sheinkopf SJ, Quinn BT, Lala MD, Kennedy D, Makris N, Lester BM, Kosofsky BE. Structural brain imaging in children and adolescents following prenatal cocaine exposure: preliminary longitudinal findings. Dev Neurosci. 2014; 36(3-4):316-28. PMID: 24994509.
      View in: PubMed
    41. Kennedy DN. Data persistence insurance. Neuroinformatics. 2014 Jul; 12(3):361-3. PMID: 24985144.
      View in: PubMed
    42. Haselgrove C, Poline JB, Kennedy DN. A simple tool for neuroimaging data sharing. Front Neuroinform. 2014; 8:52. PMID: 24904398.
      View in: PubMed
    43. Rane P, Haselgrove C, Hodge SM, Frazier JA, Kennedy DN. Structure-centered portal for child psychiatry research. Front Neuroinform. 2014; 8:47. PMID: 24817850.
      View in: PubMed
    44. Huang W, King JA, Ursprung WW, Zheng S, Zhang N, Kennedy DN, Ziedonis D, DiFranza JR. The development and expression of physical nicotine dependence corresponds to structural and functional alterations in the anterior cingulate-precuneus pathway. Brain Behav. 2014 May; 4(3):408-17. PMID: 24944870.
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    45. Mick E, McGough J, Deutsch CK, Frazier JA, Kennedy D, Goldberg RJ. Genome-wide association study of proneness to anger. PLoS One. 2014; 9(1):e87257. PMID: 24489884.
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    46. Guo X, Li J, Wei Q, Fan X, Kennedy DN, Shen Y, Chen H, Zhao J. Duration of untreated psychosis is associated with temporal and occipitotemporal gray matter volume decrease in treatment naïve schizophrenia. PLoS One. 2013; 8(12):e83679. PMID: 24391807.
      View in: PubMed
    47. Akshoomoff N, Newman E, Thompson WK, McCabe C, Bloss CS, Chang L, Amaral DG, Casey BJ, Ernst TM, Frazier JA, Gruen JR, Kaufmann WE, Kenet T, Kennedy DN, Libiger O, Mostofsky S, Murray SS, Sowell ER, Schork N, Dale AM, Jernigan TL. The NIH Toolbox Cognition Battery: results from a large normative developmental sample (PING). Neuropsychology. 2014 Jan; 28(1):1-10. PMID: 24219608.
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    48. Huang W, DiFranza JR, Kennedy DN, Zhang N, Ziedonis D, Ursprung S, King JA. Progressive levels of physical dependence to tobacco coincide with changes in the anterior cingulum bundle microstructure. PLoS One. 2013; 8(7):e67837. PMID: 23861816.
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    49. Kennedy DN. Data citation and the author byline: who's line is it anyway? Neuroinformatics. 2013 Jul; 11(3):263-6. PMID: 23852890.
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    50. Czerniak SM, Sikoglu EM, King JA, Kennedy DN, Mick E, Frazier J, Moore CM. Areas of the brain modulated by single-dose methylphenidate treatment in youth with ADHD during task-based fMRI: a systematic review. Harv Rev Psychiatry. 2013 May-Jun; 21(3):151-62. PMID: 23660970.
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    51. Fair DA, Nigg JT, Iyer S, Bathula D, Mills KL, Dosenbach NU, Schlaggar BL, Mennes M, Gutman D, Bangaru S, Buitelaar JK, Dickstein DP, Di Martino A, Kennedy DN, Kelly C, Luna B, Schweitzer JB, Velanova K, Wang YF, Mostofsky S, Castellanos FX, Milham MP. Distinct neural signatures detected for ADHD subtypes after controlling for micro-movements in resting state functional connectivity MRI data. Front Syst Neurosci. 2012; 6:80. PMID: 23382713.
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    52. De Schutter E, Ascoli GA, Kennedy DN. Ten years of neuroinformatics. Neuroinformatics. 2012 Oct; 10(4):329-30. PMID: 22987113.
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    53. Brown TT, Kuperman JM, Chung Y, Erhart M, McCabe C, Hagler DJ, Venkatraman VK, Akshoomoff N, Amaral DG, Bloss CS, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Kaufmann WE, Kenet T, Kennedy DN, Murray SS, Sowell ER, Jernigan TL, Dale AM. Neuroanatomical assessment of biological maturity. Curr Biol. 2012 Sep 25; 22(18):1693-8. PMID: 22902750.
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    54. Breeze JL, Poline JB, Kennedy DN. Data sharing and publishing in the field of neuroimaging. Gigascience. 2012; 1(1):9. PMID: 23587272.
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    55. Choe MS, Ortiz-Mantilla S, Makris N, Gregas M, Bacic J, Haehn D, Kennedy D, Pienaar R, Caviness VS, Benasich AA, Grant PE. Regional infant brain development: an MRI-based morphometric analysis in 3 to 13 month olds. Cereb Cortex. 2013 Sep; 23(9):2100-17. PMID: 22772652.
      View in: PubMed
    56. Kennedy DN, Haselgrove C, Hodge SM, Rane PS, Makris N, Frazier JA. CANDIShare: a resource for pediatric neuroimaging data. Neuroinformatics. 2012 Jul; 10(3):319-22. PMID: 22006352.
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    57. Kennedy DN. The benefits of preparing data for sharing even when you don't. Neuroinformatics. 2012 Jul; 10(3):223-4. PMID: 22661300.
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    58. Poline JB, Breeze JL, Ghosh S, Gorgolewski K, Halchenko YO, Hanke M, Haselgrove C, Helmer KG, Keator DB, Marcus DS, Poldrack RA, Schwartz Y, Ashburner J, Kennedy DN. Data sharing in neuroimaging research. Front Neuroinform. 2012; 6:9. PMID: 22493576.
      View in: PubMed
    59. Kennedy DN, Hodge SM, Gao Y, Frazier JA, Haselgrove C. The internet brain volume database: a public resource for storage and retrieval of volumetric data. Neuroinformatics. 2012 Apr; 10(2):129-40. PMID: 21931990.
      View in: PubMed
    60. Bakken TE, Roddey JC, Djurovic S, Akshoomoff N, Amaral DG, Bloss CS, Casey BJ, Chang L, Ernst TM, Gruen JR, Jernigan TL, Kaufmann WE, Kenet T, Kennedy DN, Kuperman JM, Murray SS, Sowell ER, Rimol LM, Mattingsdal M, Melle I, Agartz I, Andreassen OA, Schork NJ, Dale AM. Association of common genetic variants in GPCPD1 with scaling of visual cortical surface area in humans. Proc Natl Acad Sci U S A. 2012 Mar 06; 109(10):3985-90. PMID: 22343285.
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    61. Bharmal N, Kennedy D, Jones L, Lee-Johnson C, Morris D, Caldwell B, Brown A, Houston T, Meeks C, Vargas R, Franco I, Razzak AR, Brown AF. Through our eyes: exploring African-American men's perspective on factors affecting transition to manhood. J Gen Intern Med. 2012 Feb; 27(2):153-9. PMID: 21910088.
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    62. Patenaude B, Smith SM, Kennedy DN, Jenkinson M. A Bayesian model of shape and appearance for subcortical brain segmentation. Neuroimage. 2011 Jun 1; 56(3):907-22. PMID: 21352927.
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    63. Lopez-Larson M, Breeze JL, Kennedy DN, Hodge SM, Tang L, Moore C, Giuliano AJ, Makris N, Caviness VS, Frazier JA. Age-related changes in the corpus callosum in early-onset bipolar disorder assessed using volumetric and cross-sectional measurements. Brain Imaging Behav. 2010 Dec; 4(3-4):220-31. PMID: 20686873.
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    64. Blood AJ, Iosifescu DV, Makris N, Perlis RH, Kennedy DN, Dougherty DD, Kim BW, Lee MJ, Wu S, Lee S, Calhoun J, Hodge SM, Fava M, Rosen BR, Smoller JW, Gasic GP, Breiter HC. Microstructural abnormalities in subcortical reward circuitry of subjects with major depressive disorder. PLoS One. 2010 Nov 29; 5(11):e13945. PMID: 21124764.
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    65. Rosso IM, Makris N, Thermenos HW, Hodge SM, Brown A, Kennedy D, Caviness VS, Faraone SV, Tsuang MT, Seidman LJ. Regional prefrontal cortex gray matter volumes in youth at familial risk for schizophrenia from the Harvard Adolescent High Risk Study. Schizophr Res. 2010 Oct; 123(1):15-21. PMID: 20705433.
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    66. Makris N, Seidman LJ, Ahern T, Kennedy DN, Caviness VS, Tsuang MT, Goldstein JM. White matter volume abnormalities and associations with symptomatology in schizophrenia. Psychiatry Res. 2010 Jul 30; 183(1):21-9. PMID: 20538438.
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    67. Kennedy DN. Making connections in the connectome era. Neuroinformatics. 2010 Jun; 8(2):61-2. PMID: 20428970.
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    68. Kim BW, Kennedy DN, Lehár J, Lee MJ, Blood AJ, Lee S, Perlis RH, Smoller JW, Morris R, Fava M, Breiter HC. Recurrent, robust and scalable patterns underlie human approach and avoidance. PLoS One. 2010 May 26; 5(5):e10613. PMID: 20532247.
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    69. Zhang N, Rane P, Huang W, Liang Z, Kennedy D, Frazier JA, King J. Mapping resting-state brain networks in conscious animals. J Neurosci Methods. 2010 Jun 15; 189(2):186-96. PMID: 20382183.
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    70. Kennedy DN, Haselgrove C, Makris N, Goldin DM, Lev MH, Caplan D, Caviness VS. WebParc: a tool for analysis of the topography and volume of stroke from MRI. Med Biol Eng Comput. 2010 Mar; 48(3):215-28. PMID: 20077026.
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    71. Hodge SM, Makris N, Kennedy DN, Caviness VS, Howard J, McGrath L, Steele S, Frazier JA, Tager-Flusberg H, Harris GJ. Cerebellum, language, and cognition in autism and specific language impairment. J Autism Dev Disord. 2010 Mar; 40(3):300-16. PMID: 19924522.
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    72. Makris N, Seidman LJ, Valera EM, Biederman J, Monuteaux MC, Kennedy DN, Caviness VS, Bush G, Crum K, Brown AB, Faraone SV. Anterior cingulate volumetric alterations in treatment-naïve adults with ADHD: a pilot study. J Atten Disord. 2010 Jan; 13(4):407-13. PMID: 20008822.
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    73. De Schutter E, Ascoli GA, Kennedy DN. Review of papers describing neuroinformatics software. Neuroinformatics. 2009 Dec; 7(4):211-2. PMID: 19936971.
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    74. King RD, George AT, Jeon T, Hynan LS, Youn TS, Kennedy DN, Dickerson B. Characterization of Atrophic Changes in the Cerebral Cortex Using Fractal Dimensional Analysis. Brain Imaging Behav. 2009 Jun; 3(2):154-166. PMID: 20740072.
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    75. Babalola KO, Patenaude B, Aljabar P, Schnabel J, Kennedy D, Crum W, Smith S, Cootes T, Jenkinson M, Rueckert D. An evaluation of four automatic methods of segmenting the subcortical structures in the brain. Neuroimage. 2009 Oct 1; 47(4):1435-47. PMID: 19463960.
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    76. Kennedy DN. Musings of a post-stimulus mind... Neuroinformatics. 2009 Jun; 7(2):85-7. PMID: 19434520.
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    77. Lopez-Larson M, Michael ES, Terry JE, Breeze JL, Hodge SM, Tang L, Kennedy DN, Moore CM, Makris N, Caviness VS, Frazier JA. Subcortical differences among youths with attention-deficit/hyperactivity disorder compared to those with bipolar disorder with and without attention-deficit/hyperactivity disorder. J Child Adolesc Psychopharmacol. 2009 Feb; 19(1):31-9. PMID: 19232021.
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    78. Luo XZ, Kennedy DN, Cohen Z. Neuroimaging informatics tools and resources clearinghouse (NITRC) resource announcement. Neuroinformatics. 2009; 7(1):55-6. PMID: 19184562.
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    79. Buccigrossi R, Ellisman M, Grethe J, Haselgrove C, Kennedy DN, Martone M, Preuss N, Reynolds K, Sullivan M, Turner J, Wagner K. The Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC). AMIA Annu Symp Proc. 2008 Nov 06; 1000. PMID: 18999128.
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    80. Bug W, Astahkov V, Boline J, Fennema-Notestine C, Grethe JS, Gupta A, Kennedy DN, Rubin DL, Sanders B, Turner JA, Martone ME. Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data. AMIA Annu Symp Proc. 2008 Nov 06; 1220. PMID: 18999211.
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    81. Makris N, Angelone L, Tulloch S, Sorg S, Kaiser J, Kennedy D, Bonmassar G. MRI-based anatomical model of the human head for specific absorption rate mapping. Med Biol Eng Comput. 2008 Dec; 46(12):1239-51. PMID: 18985401.
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    82. Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW. The neuroscience information framework: a data and knowledge environment for neuroscience. Neuroinformatics. 2008 Sep; 6(3):149-60. PMID: 18946742.
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    83. Makris N, Gasic GP, Kennedy DN, Hodge SM, Kaiser JR, Lee MJ, Kim BW, Blood AJ, Evins AE, Seidman LJ, Iosifescu DV, Lee S, Baxter C, Perlis RH, Smoller JW, Fava M, Breiter HC. Cortical thickness abnormalities in cocaine addiction--a reflection of both drug use and a pre-existing disposition to drug abuse? Neuron. 2008 Oct 9; 60(1):174-88. PMID: 18940597.
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    84. Makris N, Papadimitriou GM, Kaiser JR, Sorg S, Kennedy DN, Pandya DN. Delineation of the middle longitudinal fascicle in humans: a quantitative, in vivo, DT-MRI study. Cereb Cortex. 2009 Apr; 19(4):777-85. PMID: 18669591.
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    85. Kennedy DN. New happenings at the NIH. Neuroinformatics. 2008; 6(2):69-70. PMID: 18604608.
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    86. Wrase J, Makris N, Braus DF, Mann K, Smolka MN, Kennedy DN, Caviness VS, Hodge SM, Tang L, Albaugh M, Ziegler DA, Davis OC, Kissling C, Schumann G, Breiter HC, Heinz A. Amygdala volume associated with alcohol abuse relapse and craving. Am J Psychiatry. 2008 Sep; 165(9):1179-84. PMID: 18593776.
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    87. Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW. iTools: a framework for classification, categorization and integration of computational biology resources. PLoS One. 2008 May 28; 3(5):e2265. PMID: 18509477.
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    88. Harris GJ, Jaffin SK, Hodge SM, Kennedy D, Caviness VS, Marinkovic K, Papadimitriou GM, Makris N, Oscar-Berman M. Frontal white matter and cingulum diffusion tensor imaging deficits in alcoholism. Alcohol Clin Exp Res. 2008 Jun; 32(6):1001-13. PMID: 18422840.
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    89. Makris N, Oscar-Berman M, Jaffin SK, Hodge SM, Kennedy DN, Caviness VS, Marinkovic K, Breiter HC, Gasic GP, Harris GJ. Decreased volume of the brain reward system in alcoholism. Biol Psychiatry. 2008 Aug 1; 64(3):192-202. PMID: 18374900.
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    90. Frazier JA, Breeze JL, Papadimitriou G, Kennedy DN, Hodge SM, Moore CM, Howard JD, Rohan MP, Caviness VS, Makris N. White matter abnormalities in children with and at risk for bipolar disorder. Bipolar Disord. 2007 Dec; 9(8):799-809. PMID: 18076529.
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    91. Frazier JA, Hodge SM, Breeze JL, Giuliano AJ, Terry JE, Moore CM, Kennedy DN, Lopez-Larson MP, Caviness VS, Seidman LJ, Zablotsky B, Makris N. Diagnostic and sex effects on limbic volumes in early-onset bipolar disorder and schizophrenia. Schizophr Bull. 2008 Jan; 34(1):37-46. PMID: 18003631.
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    92. Hui KK, Nixon EE, Vangel MG, Liu J, Marina O, Napadow V, Hodge SM, Rosen BR, Makris N, Kennedy DN. Characterization of the "deqi" response in acupuncture. BMC Complement Altern Med. 2007 Oct 31; 7:33. PMID: 17973984.
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    93. Makris N, Buka SL, Biederman J, Papadimitriou GM, Hodge SM, Valera EM, Brown AB, Bush G, Monuteaux MC, Caviness VS, Kennedy DN, Seidman LJ. Attention and executive systems abnormalities in adults with childhood ADHD: A DT-MRI study of connections. Cereb Cortex. 2008 May; 18(5):1210-20. PMID: 17906338.
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    94. Kennedy DN. Neuroinformatics and the Society for Neuroscience. Neuroinformatics. 2007 Sep; 5(3):141-2. PMID: 27518552.
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    95. Makris N, Papadimitriou GM, Sorg S, Kennedy DN, Caviness VS, Pandya DN. The occipitofrontal fascicle in humans: a quantitative, in vivo, DT-MRI study. Neuroimage. 2007 Oct 1; 37(4):1100-11. PMID: 17681797.
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    96. Ahn MS, Breeze JL, Makris N, Kennedy DN, Hodge SM, Herbert MR, Seidman LJ, Biederman J, Caviness VS, Frazier JA. Anatomic brain magnetic resonance imaging of the basal ganglia in pediatric bipolar disorder. J Affect Disord. 2007 Dec; 104(1-3):147-54. PMID: 17532475.
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    97. Cannistraro PA, Makris N, Howard JD, Wedig MM, Hodge SM, Wilhelm S, Kennedy DN, Rauch SL. A diffusion tensor imaging study of white matter in obsessive-compulsive disorder. Depress Anxiety. 2007; 24(6):440-6. PMID: 17096398.
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    98. Walder DJ, Seidman LJ, Makris N, Tsuang MT, Kennedy DN, Goldstein JM. Neuroanatomic substrates of sex differences in language dysfunction in schizophrenia: a pilot study. Schizophr Res. 2007 Feb; 90(1-3):295-301. PMID: 17150336.
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    99. Goldstein JM, Seidman LJ, Makris N, Ahern T, O'Brien LM, Caviness VS, Kennedy DN, Faraone SV, Tsuang MT. Hypothalamic abnormalities in schizophrenia: sex effects and genetic vulnerability. Biol Psychiatry. 2007 Apr 15; 61(8):935-45. PMID: 17046727.
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    100. Caplan D, Waters G, Kennedy D, Alpert N, Makris N, Dede G, Michaud J, Reddy A. A study of syntactic processing in aphasia II: neurological aspects. Brain Lang. 2007 May; 101(2):151-77. PMID: 16997366.
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    101. Makris N, Papadimitriou GM, van der Kouwe A, Kennedy DN, Hodge SM, Dale AM, Benner T, Wald LL, Wu O, Tuch DS, Caviness VS, Moore TL, Killiany RJ, Moss MB, Rosene DL. Frontal connections and cognitive changes in normal aging rhesus monkeys: a DTI study. Neurobiol Aging. 2007 Oct; 28(10):1556-67. PMID: 16962214.
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    102. Keuthen NJ, Makris N, Schlerf JE, Martis B, Savage CR, McMullin K, Seidman LJ, Schmahmann JD, Kennedy DN, Hodge SM, Rauch SL. Evidence for reduced cerebellar volumes in trichotillomania. Biol Psychiatry. 2007 Feb 1; 61(3):374-81. PMID: 16945351.
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    103. Makris N, Kaiser J, Haselgrove C, Seidman LJ, Biederman J, Boriel D, Valera EM, Papadimitriou GM, Fischl B, Caviness VS, Kennedy DN. Human cerebral cortex: a system for the integration of volume- and surface-based representations. Neuroimage. 2006 Oct 15; 33(1):139-53. PMID: 16920366.
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    104. Makris N, Biederman J, Valera EM, Bush G, Kaiser J, Kennedy DN, Caviness VS, Faraone SV, Seidman LJ. Cortical thinning of the attention and executive function networks in adults with attention-deficit/hyperactivity disorder. Cereb Cortex. 2007 Jun; 17(6):1364-75. PMID: 16920883.
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    105. Seidman LJ, Valera EM, Makris N, Monuteaux MC, Boriel DL, Kelkar K, Kennedy DN, Caviness VS, Bush G, Aleardi M, Faraone SV, Biederman J. Dorsolateral prefrontal and anterior cingulate cortex volumetric abnormalities in adults with attention-deficit/hyperactivity disorder identified by magnetic resonance imaging. Biol Psychiatry. 2006 Nov 15; 60(10):1071-80. PMID: 16876137.
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    106. Nishida M, Makris N, Kennedy DN, Vangel M, Fischl B, Krishnamoorthy KS, Caviness VS, Grant PE. Detailed semiautomated MRI based morphometry of the neonatal brain: preliminary results. Neuroimage. 2006 Sep; 32(3):1041-9. PMID: 16857388.
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    107. Napadow V, Dhond R, Kennedy D, Hui KK, Makris N. Automated brainstem co-registration (ABC) for MRI. Neuroimage. 2006 Sep; 32(3):1113-9. PMID: 16839781.
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    108. O'Brien LM, Ziegler DA, Deutsch CK, Kennedy DN, Goldstein JM, Seidman LJ, Hodge S, Makris N, Caviness V, Frazier JA, Herbert MR. Adjustment for whole brain and cranial size in volumetric brain studies: a review of common adjustment factors and statistical methods. Harv Rev Psychiatry. 2006 May-Jun; 14(3):141-51. PMID: 16787886.
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    109. Makris N, Goldstein JM, Kennedy D, Hodge SM, Caviness VS, Faraone SV, Tsuang MT, Seidman LJ. Decreased volume of left and total anterior insular lobule in schizophrenia. Schizophr Res. 2006 Apr; 83(2-3):155-71. PMID: 16448806.
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    110. Murphy SN, Mendis ME, Grethe JS, Gollub RL, Kennedy D, Rosen BR. A web portal that enables collaborative use of advanced medical image processing and informatics tools through the Biomedical Informatics Research Network (BIRN). AMIA Annu Symp Proc. 2006; 579-83. PMID: 17238407.
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    111. Desai M, Kennedy DN, Mangoubi R, Shah J, Karl C, Worth A, Makris N, Pien H. Model-based variational smoothing and segmentation for diffusion tensor imaging in the brain. Neuroinformatics. 2006; 4(3):217-34. PMID: 16943628.
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    112. Kennedy DN, Haselgrove C. The internet analysis tools registry: a public resource for image analysis. Neuroinformatics. 2006; 4(3):263-70. PMID: 16943631.
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    113. Kennedy D. Where's the beef ? Missing data in the information age. Neuroinformatics. 2006; 4(4):271-3. PMID: 17142837.
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    114. De Schutter E, Ascoli GA, Kennedy DN. On the future of the human brain project. Neuroinformatics. 2006; 4(2):129-30. PMID: 16845164.
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    115. Frazier JA, Breeze JL, Makris N, Giuliano AS, Herbert MR, Seidman L, Biederman J, Hodge SM, Dieterich ME, Gerstein ED, Kennedy DN, Rauch SL, Cohen BM, Caviness VS. Cortical gray matter differences identified by structural magnetic resonance imaging in pediatric bipolar disorder. Bipolar Disord. 2005 Dec; 7(6):555-69. PMID: 16403181.
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    116. Jovicich J, Czanner S, Greve D, Haley E, van der Kouwe A, Gollub R, Kennedy D, Schmitt F, Brown G, Macfall J, Fischl B, Dale A. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. Neuroimage. 2006 Apr 1; 30(2):436-43. PMID: 16300968.
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    117. Goldstein JM, Jerram M, Poldrack R, Ahern T, Kennedy DN, Seidman LJ, Makris N. Hormonal cycle modulates arousal circuitry in women using functional magnetic resonance imaging. J Neurosci. 2005 Oct 5; 25(40):9309-16. PMID: 16207891.
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    118. Hui KK, Liu J, Marina O, Napadow V, Haselgrove C, Kwong KK, Kennedy DN, Makris N. The integrated response of the human cerebro-cerebellar and limbic systems to acupuncture stimulation at ST 36 as evidenced by fMRI. Neuroimage. 2005 Sep; 27(3):479-96. PMID: 16046146.
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    119. Frazier JA, Chiu S, Breeze JL, Makris N, Lange N, Kennedy DN, Herbert MR, Bent EK, Koneru VK, Dieterich ME, Hodge SM, Rauch SL, Grant PE, Cohen BM, Seidman LJ, Caviness VS, Biederman J. Structural brain magnetic resonance imaging of limbic and thalamic volumes in pediatric bipolar disorder. Am J Psychiatry. 2005 Jul; 162(7):1256-65. PMID: 15994707.
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    120. Makris N, Schlerf JE, Hodge SM, Haselgrove C, Albaugh MD, Seidman LJ, Rauch SL, Harris G, Biederman J, Caviness VS, Kennedy DN, Schmahmann JD. MRI-based surface-assisted parcellation of human cerebellar cortex: an anatomically specified method with estimate of reliability. Neuroimage. 2005 May 1; 25(4):1146-60. PMID: 15850732.
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    121. Makris N, Caviness VS, Kennedy DN. An introduction to MR imaging-based stroke morphometry. Neuroimaging Clin N Am. 2005 May; 15(2):325-39, x. PMID: 16198943.
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    122. Moss M, Franks M, Briggs P, Kennedy D, Scholey A. Compromised arterial oxygen saturation in elderly asthma sufferers results in selective cognitive impairment. J Clin Exp Neuropsychol. 2005 Feb; 27(2):139-50. PMID: 15903147.
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    123. Kennedy DN. The impact of neuroinformatics. Neuroinformatics. 2005; 3(4):287-92. PMID: 16284411.
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    124. Makris N, Kennedy DN, McInerney S, Sorensen AG, Wang R, Caviness VS, Pandya DN. Segmentation of subcomponents within the superior longitudinal fascicle in humans: a quantitative, in vivo, DT-MRI study. Cereb Cortex. 2005 Jun; 15(6):854-69. PMID: 15590909.
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    125. De Fossé L, Hodge SM, Makris N, Kennedy DN, Caviness VS, McGrath L, Steele S, Ziegler DA, Herbert MR, Frazier JA, Tager-Flusberg H, Harris GJ. Language-association cortex asymmetry in autism and specific language impairment. Ann Neurol. 2004 Dec; 56(6):757-66. PMID: 15478219.
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    126. Makris N, Gasic GP, Seidman LJ, Goldstein JM, Gastfriend DR, Elman I, Albaugh MD, Hodge SM, Ziegler DA, Sheahan FS, Caviness VS, Tsuang MT, Kennedy DN, Hyman SE, Rosen BR, Breiter HC. Decreased absolute amygdala volume in cocaine addicts. Neuron. 2004 Nov 18; 44(4):729-40. PMID: 15541319.
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    127. Pardo FS, Aronen HJ, Fitzek M, Kennedy DN, Efird J, Rosen BR, Fischman AJ. Correlation of FDG-PET interpretation with survival in a cohort of glioma patients. Anticancer Res. 2004 Jul-Aug; 24(4):2359-65. PMID: 15330185.
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    128. Herbert MR, Ziegler DA, Makris N, Filipek PA, Kemper TL, Normandin JJ, Sanders HA, Kennedy DN, Caviness VS. Localization of white matter volume increase in autism and developmental language disorder. Ann Neurol. 2004 Apr; 55(4):530-40. PMID: 15048892.
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    129. Kennedy DN. Barriers to the socialization of information. Neuroinformatics. 2004; 2(4):367-8. PMID: 15800368.
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    130. Fischl B, van der Kouwe A, Destrieux C, Halgren E, Ségonne F, Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V, Makris N, Rosen B, Dale AM. Automatically parcellating the human cerebral cortex. Cereb Cortex. 2004 Jan; 14(1):11-22. PMID: 14654453.
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    131. Makris N, Hodge SM, Haselgrove C, Kennedy DN, Dale A, Fischl B, Rosen BR, Harris G, Caviness VS, Schmahmann JD. Human cerebellum: surface-assisted cortical parcellation and volumetry with magnetic resonance imaging. J Cogn Neurosci. 2003 May 15; 15(4):584-99. PMID: 12803969.
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    132. Faraone SV, Seidman LJ, Kremen WS, Kennedy D, Makris N, Caviness VS, Goldstein J, Tsuang MT. Structural brain abnormalities among relatives of patients with schizophrenia: implications for linkage studies. Schizophr Res. 2003 Apr 1; 60(2-3):125-40. PMID: 12591577.
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    133. Takeoka M, Kim F, Caviness VS, Kennedy DN, Makris N, Holmes GL. MRI volumetric analysis in rasmussen encephalitis: a longitudinal study. Epilepsia. 2003 Feb; 44(2):247-51. PMID: 12558582.
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    134. Rauch SL, Phillips KA, Segal E, Makris N, Shin LM, Whalen PJ, Jenike MA, Caviness VS, Kennedy DN. A preliminary morphometric magnetic resonance imaging study of regional brain volumes in body dysmorphic disorder. Psychiatry Res. 2003 Jan 20; 122(1):13-9. PMID: 12589879.
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    135. Kennedy DN. Share and share alike. Neuroinformatics. 2003; 1(3):211-3. PMID: 15046244.
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    136. Kennedy DN, Haselgrove C, McInerney S. MRI-based morphometric of typical and atypical brain development. Ment Retard Dev Disabil Res Rev. 2003; 9(3):155-60. PMID: 12953294.
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    137. Gardner D, Toga AW, Ascoli GA, Beatty JT, Brinkley JF, Dale AM, Fox PT, Gardner EP, George JS, Goddard N, Harris KM, Herskovits EH, Hines ML, Jacobs GA, Jacobs RE, Jones EG, Kennedy DN, Kimberg DY, Mazziotta JC, Miller PL, Mori S, Mountain DC, Reiss AL, Rosen GD, Rottenberg DA, Shepherd GM, Smalheiser NR, Smith KP, Strachan T, Van Essen DC, Williams RW, Wong ST. Towards effective and rewarding data sharing. Neuroinformatics. 2003; 1(3):289-95. PMID: 15046250.
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    138. Ascoli GA, De Schutter E, Kennedy DN. An information science infrastructure for neuroscience. Neuroinformatics. 2003; 1(1):1-2. PMID: 15055390.
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    139. Desai M, Mangoubi R, Shah J, Karl W, Pien H, Worth A, Kennedy D. Functional MRI activity characterization using response time shift estimates from curve evolution. IEEE Trans Med Imaging. 2002 Nov; 21(11):1402-12. PMID: 12575877.
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    140. Seidman LJ, Faraone SV, Goldstein JM, Kremen WS, Horton NJ, Makris N, Toomey R, Kennedy D, Caviness VS, Tsuang MT. Left hippocampal volume as a vulnerability indicator for schizophrenia: a magnetic resonance imaging morphometric study of nonpsychotic first-degree relatives. Arch Gen Psychiatry. 2002 Sep; 59(9):839-49. PMID: 12215084.
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    141. Goldstein JM, Seidman LJ, O'Brien LM, Horton NJ, Kennedy DN, Makris N, Caviness VS, Faraone SV, Tsuang MT. Impact of normal sexual dimorphisms on sex differences in structural brain abnormalities in schizophrenia assessed by magnetic resonance imaging. Arch Gen Psychiatry. 2002 Feb; 59(2):154-64. PMID: 11825137.
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    142. Fischl B, Salat DH, Busa E, Albert M, Dieterich M, Haselgrove C, van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, Makris N, Rosen B, Dale AM. Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron. 2002 Jan 31; 33(3):341-55. PMID: 11832223.
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    143. Belliveau JW, Kennedy DN, McKinstry RC, Buchbinder BR, Weisskoff RM, Cohen MS, Vevea JM, Brady TJ, Rosen BR. Functional mapping of the human visual cortex by magnetic resonance imaging. Science. 1991 Nov 1; 254(5032):716-9. PMID: 1948051.
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