Header Logo

Connection

Craig Peterson to Transcription Factors

This is a "connection" page, showing publications Craig Peterson has written about Transcription Factors.
Connection Strength

3.663
  1. Topal S, Van C, Xue Y, Carey MF, Peterson CL. INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins. Cell Rep. 2020 09 08; 32(10):108106.
    View in: PubMed
    Score: 0.410
  2. Bennett G, Peterson CL. SWI/SNF recruitment to a DNA double-strand break by the NuA4 and Gcn5 histone acetyltransferases. DNA Repair (Amst). 2015 Jun; 30:38-45.
    View in: PubMed
    Score: 0.281
  3. Manning BJ, Peterson CL. Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme. Proc Natl Acad Sci U S A. 2014 Dec 16; 111(50):17827-32.
    View in: PubMed
    Score: 0.275
  4. Swygert SG, Peterson CL. Chromatin dynamics: interplay between remodeling enzymes and histone modifications. Biochim Biophys Acta. 2014 Aug; 1839(8):728-36.
    View in: PubMed
    Score: 0.261
  5. Kundu S, Peterson CL. Dominant role for signal transduction in the transcriptional memory of yeast GAL genes. Mol Cell Biol. 2010 May; 30(10):2330-40.
    View in: PubMed
    Score: 0.198
  6. Sinha M, Peterson CL. Chromatin dynamics during repair of chromosomal DNA double-strand breaks. Epigenomics. 2009 Dec; 1(2):371-85.
    View in: PubMed
    Score: 0.194
  7. Peterson CL. Purification of recombinant Drosophila ACF. Cold Spring Harb Protoc. 2009 Apr; 2009(4):pdb.prot5115.
    View in: PubMed
    Score: 0.186
  8. Smith CL, Peterson CL. A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol Cell Biol. 2005 Jul; 25(14):5880-92.
    View in: PubMed
    Score: 0.143
  9. Peterson CL. Heterochromatin: Hiding from the remodeling machines. Mol Cell. 2024 Sep 05; 84(17):3167-3169.
    View in: PubMed
    Score: 0.135
  10. Boyer LA, Langer MR, Crowley KA, Tan S, Denu JM, Peterson CL. Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol Cell. 2002 Oct; 10(4):935-42.
    View in: PubMed
    Score: 0.118
  11. Peterson CL. Chromatin remodeling: nucleosomes bulging at the seams. Curr Biol. 2002 Apr 02; 12(7):R245-7.
    View in: PubMed
    Score: 0.114
  12. Baier AS, Peterson CL. Fluorescence approaches for biochemical analysis of ATP-dependent chromatin remodeling enzymes. Methods Enzymol. 2022; 673:1-17.
    View in: PubMed
    Score: 0.114
  13. Fry CJ, Peterson CL. Transcription. Unlocking the gates to gene expression. Science. 2002 Mar 08; 295(5561):1847-8.
    View in: PubMed
    Score: 0.114
  14. Peterson CL, Workman JL. Promoter targeting and chromatin remodeling by the SWI/SNF complex. Curr Opin Genet Dev. 2000 Apr; 10(2):187-92.
    View in: PubMed
    Score: 0.099
  15. Xue Y, Pradhan SK, Sun F, Chronis C, Tran N, Su T, Van C, Vashisht A, Wohlschlegel J, Peterson CL, Timmers HTM, Kurdistani SK, Carey MF. Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals. Mol Cell. 2017 Aug 17; 67(4):594-607.e4.
    View in: PubMed
    Score: 0.083
  16. Adkins NL, Swygert SG, Kaur P, Niu H, Grigoryev SA, Sung P, Wang H, Peterson CL. Nucleosome-like, Single-stranded DNA (ssDNA)-Histone Octamer Complexes and the Implication for DNA Double Strand Break Repair. J Biol Chem. 2017 Mar 31; 292(13):5271-5281.
    View in: PubMed
    Score: 0.080
  17. Echtenkamp FJ, Gvozdenov Z, Adkins NL, Zhang Y, Lynch-Day M, Watanabe S, Peterson CL, Freeman BC. Hsp90 and p23 Molecular Chaperones Control Chromatin Architecture by Maintaining the Functional Pool of the RSC Chromatin Remodeler. Mol Cell. 2016 12 01; 64(5):888-899.
    View in: PubMed
    Score: 0.079
  18. Jeronimo C, Watanabe S, Kaplan CD, Peterson CL, Robert F. The Histone Chaperones FACT and Spt6 Restrict H2A.Z from Intragenic Locations. Mol Cell. 2015 Jun 18; 58(6):1113-23.
    View in: PubMed
    Score: 0.071
  19. Sanz AB, Garc?a R, Rodr?guez-Pe?a JM, D?ez-Mu?iz S, Nombela C, Peterson CL, Arroyo J. Chromatin remodeling by the SWI/SNF complex is essential for transcription mediated by the yeast cell wall integrity MAPK pathway. Mol Biol Cell. 2012 Jul; 23(14):2805-17.
    View in: PubMed
    Score: 0.058
  20. Wippo CJ, Israel L, Watanabe S, Hochheimer A, Peterson CL, Korber P. The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J. 2011 Apr 06; 30(7):1277-88.
    View in: PubMed
    Score: 0.053
  21. Sinha M, Watanabe S, Johnson A, Moazed D, Peterson CL. Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell. 2009 Sep 18; 138(6):1109-21.
    View in: PubMed
    Score: 0.048
  22. Peterson CL. Reconstitution of nucleosomal arrays using recombinant Drosophila ACF and NAP1. Cold Spring Harb Protoc. 2009 Apr; 2009(4):pdb.prot5114.
    View in: PubMed
    Score: 0.046
  23. Kundu S, Peterson CL. Role of chromatin states in transcriptional memory. Biochim Biophys Acta. 2009 Jun; 1790(6):445-55.
    View in: PubMed
    Score: 0.046
  24. Kundu S, Horn PJ, Peterson CL. SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev. 2007 Apr 15; 21(8):997-1004.
    View in: PubMed
    Score: 0.041
  25. Zhang Y, Smith CL, Saha A, Grill SW, Mihardja S, Smith SB, Cairns BR, Peterson CL, Bustamante C. DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell. 2006 Nov 17; 24(4):559-68.
    View in: PubMed
    Score: 0.039
  26. Shundrovsky A, Smith CL, Lis JT, Peterson CL, Wang MD. Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules. Nat Struct Mol Biol. 2006 Jun; 13(6):549-54.
    View in: PubMed
    Score: 0.038
  27. Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, Peterson CL. Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science. 2006 Feb 10; 311(5762):844-7.
    View in: PubMed
    Score: 0.037
  28. Hill DA, Peterson CL, Imbalzano AN. Effects of HMGN1 on chromatin structure and SWI/SNF-mediated chromatin remodeling. J Biol Chem. 2005 Dec 16; 280(50):41777-83.
    View in: PubMed
    Score: 0.037
  29. Smith CL, Peterson CL. ATP-dependent chromatin remodeling. Curr Top Dev Biol. 2005; 65:115-48.
    View in: PubMed
    Score: 0.035
  30. Vicent GP, Nacht AS, Smith CL, Peterson CL, Dimitrov S, Beato M. DNA instructed displacement of histones H2A and H2B at an inducible promoter. Mol Cell. 2004 Nov 05; 16(3):439-52.
    View in: PubMed
    Score: 0.034
  31. Smith CL, Horowitz-Scherer R, Flanagan JF, Woodcock CL, Peterson CL. Structural analysis of the yeast SWI/SNF chromatin remodeling complex. Nat Struct Biol. 2003 Feb; 10(2):141-5.
    View in: PubMed
    Score: 0.030
  32. Jaskelioff M, Van Komen S, Krebs JE, Sung P, Peterson CL. Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J Biol Chem. 2003 Mar 14; 278(11):9212-8.
    View in: PubMed
    Score: 0.030
  33. Horn PJ, Carruthers LM, Logie C, Hill DA, Solomon MJ, Wade PA, Imbalzano AN, Hansen JC, Peterson CL. Phosphorylation of linker histones regulates ATP-dependent chromatin remodeling enzymes. Nat Struct Biol. 2002 Apr; 9(4):263-7.
    View in: PubMed
    Score: 0.029
  34. Horn PJ, Crowley KA, Carruthers LM, Hansen JC, Peterson CL. The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays. Nat Struct Biol. 2002 Mar; 9(3):167-71.
    View in: PubMed
    Score: 0.028
  35. Gutierrez JI, Brittingham GP, Karadeniz Y, Tran KD, Dutta A, Holehouse AS, Peterson CL, Holt LJ. SWI/SNF senses carbon starvation with a pH-sensitive low-complexity sequence. Elife. 2022 02 07; 11.
    View in: PubMed
    Score: 0.028
  36. Krietenstein N, Wal M, Watanabe S, Park B, Peterson CL, Pugh BF, Korber P. Genomic Nucleosome Organization Reconstituted with Pure Proteins. Cell. 2016 Oct 20; 167(3):709-721.e12.
    View in: PubMed
    Score: 0.020
  37. Fu Y, Sinha M, Peterson CL, Weng Z. The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet. 2008 Jul 25; 4(7):e1000138.
    View in: PubMed
    Score: 0.011
  38. Dechassa ML, Zhang B, Horowitz-Scherer R, Persinger J, Woodcock CL, Peterson CL, Bartholomew B. Architecture of the SWI/SNF-nucleosome complex. Mol Cell Biol. 2008 Oct; 28(19):6010-21.
    View in: PubMed
    Score: 0.011
  39. Gaillard H, Fitzgerald DJ, Smith CL, Peterson CL, Richmond TJ, Thoma F. Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. J Biol Chem. 2003 May 16; 278(20):17655-63.
    View in: PubMed
    Score: 0.008
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.