Summer Thyme to DNA
This is a "connection" page, showing publications Summer Thyme has written about DNA.
Connection Strength
1.095
-
Thyme S, Baker D. Redesigning the specificity of protein-DNA interactions with Rosetta. Methods Mol Biol. 2014; 1123:265-82.
Score: 0.305
-
Thyme SB, Baker D, Bradley P. Improved modeling of side-chain--base interactions and plasticity in protein--DNA interface design. J Mol Biol. 2012 Jun 08; 419(3-4):255-74.
Score: 0.270
-
Szeto MD, Boissel SJ, Baker D, Thyme SB. Mining endonuclease cleavage determinants in genomic sequence data. J Biol Chem. 2011 Sep 16; 286(37):32617-27.
Score: 0.258
-
Thyme S, Song Y. Computational Design of DNA-Binding Proteins. Methods Mol Biol. 2016; 1414:265-83.
Score: 0.088
-
Thyme SB, Song Y, Brunette TJ, Szeto MD, Kusak L, Bradley P, Baker D. Massively parallel determination and modeling of endonuclease substrate specificity. Nucleic Acids Res. 2014 Dec 16; 42(22):13839-52.
Score: 0.081
-
Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D. Exploitation of binding energy for catalysis and design. Nature. 2009 Oct 29; 461(7268):1300-4.
Score: 0.057
-
Park JU, Petassi MT, Hsieh SC, Mehrotra E, Schuler G, Budhathoki J, Truong VH, Thyme SB, Ke A, Kellogg EH, Peters JE. Multiple adaptations underly co-option of a CRISPR surveillance complex for RNA-guided DNA transposition. Mol Cell. 2023 06 01; 83(11):1827-1838.e6.
Score: 0.037