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Raza Rahman PhD

TitleInstructor
InstitutionUMass Chan Medical School
DepartmentMedicine
AddressUMass Chan Medical School
55 Lake Avenue North
Worcester MA 01655
Phone508-334-1000
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    Other Positions
    InstitutionT.H. Chan School of Medicine
    DepartmentMedicine
    DivisionGastroenterology


    Collapse Biography 
    Collapse education and training
    Mohammad Ali Jinnah University, Karachi, , PakistanBSBioinformatics
    Saarland Univeristy, Saarland, , GermanyMSBioinformatics
    Georg August University of Göttingen, Gottingen, , GermanyPHDComputer Science

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Watson BR, Paul B, Rahman RU, Amir-Zilberstein L, Segerstolpe ?, Epstein ET, Murphy S, Geistlinger L, Lee T, Shih A, Deguine J, Xavier RJ, Moffitt JR, Mullen AC. Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution. Nat Commun. 2025 Jan 02; 16(1):319. PMID: 39747812.
      Citations:    
    2. Hess A, Gentile SD, Saad AB, Rahman RU, Habboub T, Pratt DS, Mullen AC. Author Correction: Single-cell transcriptomics stratifies organoid models of metabolic dysfunction-associated steatotic liver disease. EMBO J. 2024 Dec; 43(24):6792-6795. PMID: 39567832.
      Citations:    
    3. Chaudhry IB, Husain MO, Khoso AB, Kiran T, Husain MI, Qurashi I, Rahman RU, Mehmood N, Drake R, Husain N, Deakin B. Beneficial adjunctive effects of the 5HT3 receptor antagonist ondansetron on symptoms, function and cognition in early phase schizophrenia in a double-blind, 2 ? 2 factorial design, randomised controlled comparison with simvastatin. J Psychopharmacol. 2024 Sep; 38(9):818-826. PMID: 39233601.
      Citations:    
    4. Sun C, Zhou C, Daneshvar K, Ben Saad A, Kratkiewicz AJ, Toles BJ, Arghiani N, Hess A, Chen JY, Pondick JV, York SR, Li W, Moran SP, Gentile SD, Rahman RU, Li Z, Zhou P, Sparks RP, Habboub T, Kim BM, Choi MY, Affo S, Schwabe RF, Popov YV, Mullen AC. Conserved long noncoding RNA TILAM promotes liver fibrosis through interaction with PML in HSCs. Hepatology. 2024 Apr 02. PMID: 38563629.
      Citations:    
    5. Hess A, Gentile SD, Ben Saad A, Rahman RU, Habboub T, Pratt DS, Mullen AC. Single-cell transcriptomics stratifies organoid models of metabolic dysfunction-associated steatotic liver disease. EMBO J. 2023 Dec 11; 42(24):e113898. PMID: 37962490.
      Citations:    Fields:    Translation:Humans
    6. Sun C, Zhou C, Daneshvar K, Kratkiewicz AJ, Saad AB, Hess A, Chen JY, Pondick JV, York SR, Li W, Moran S, Gentile S, Rahman RU, Li Z, Sparks R, Habboub T, Kim BM, Choi MY, Affo S, Schwabe RF, Popov YV, Mullen AC. Conserved long noncoding RNA TILAM promotes liver fibrosis through interaction with PML in hepatic stellate cells. bioRxiv. 2023 Jul 30. PMID: 37546982.
      Citations:    
    7. Kaczmarczyk L, Bansal V, Rajput A, Rahman RU, Krzyzak W, Degen J, Poll S, Fuhrmann M, Bonn S, Jackson WS. Correction: Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice. PLoS Biol. 2022 Nov; 20(11):e3001882. PMID: 36318742.
      Citations:    
    8. Fraschilla I, Amatullah H, Rahman RU, Jeffrey KL. Immune chromatin reader SP140 regulates microbiota and risk for inflammatory bowel disease. Cell Host Microbe. 2022 10 12; 30(10):1370-1381.e5. PMID: 36130593.
      Citations:    
    9. Li W, Chen JY, Sun C, Sparks RP, Pantano L, Rahman RU, Moran SP, Pondick JV, Kirchner R, Wrobel D, Bieler M, Sauer A, Ho Sui SJ, Doerner JF, Rippmann JF, Mullen AC. Nanchangmycin regulates FYN, PTK2, and MAPK1/3 to control the fibrotic activity of human hepatic stellate cells. Elife. 2022 05 26; 11. PMID: 35617485.
      Citations: 3     Fields:    Translation:HumansCells
    10. Adiliaghdam F, Amatullah H, Digumarthi S, Saunders TL, Rahman RU, Wong LP, Sadreyev R, Droit L, Paquette J, Goyette P, Rioux JD, Hodin R, Mihindukulasuriya KA, Handley SA, Jeffrey KL. Human enteric viruses autonomously shape inflammatory bowel disease phenotype through divergent innate immunomodulation. Sci Immunol. 2022 04 08; 7(70):eabn6660. PMID: 35394816.
      Citations:    
    11. Karen A, Abd-Elfattah A, Nasef M, Rahman RU, Ihsan MB, Muthukumaran S. Factors affecting outcomes of embryo transfer in dromedary camels: A retrospective study. Reprod Domest Anim. 2022 Apr; 57(4):402-417. PMID: 34971452.
      Citations:    
    12. Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S. SEAweb: the small RNA Expression Atlas web application. Nucleic Acids Res. 2020 01 08; 48(D1):D204-D219. PMID: 31598718.
      Citations:    
    13. Kaczmarczyk L, Bansal V, Rajput A, Rahman RU, Krzyzak W, Degen J, Poll S, Fuhrmann M, Bonn S, Jackson WS. Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice. PLoS Biol. 2019 08; 17(8):e3000374. PMID: 31393866.
      Citations:    
    14. Wanner N, Vornweg J, Combes A, Wilson S, Plappert J, Rafflenbeul G, Puelles VG, Rahman RU, Liwinski T, Lindner S, Grahammer F, Kretz O, Wlodek ME, Romano T, Moritz KM, Boerries M, Busch H, Bonn S, Little MH, Bechtel-Walz W, Huber TB. DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation. J Am Soc Nephrol. 2019 01; 30(1):63-78. PMID: 30518531.
      Citations:    
    15. Mandad S, Rahman RU, Centeno TP, Vidal RO, Wildhagen H, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Kirli K, Benito E, Fischer A, Yousefi RY, Dennerlein S, Rehling P, Feussner I, Urlaub H, Bonn S, Rizzoli SO, Fornasiero EF. The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain. Sci Rep. 2018 11 15; 8(1):16913. PMID: 30443017.
      Citations:    
    16. Fornasiero EF, Mandad S, Wildhagen H, Alevra M, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Sakib MS, Fard MK, Kirli K, Centeno TP, Vidal RO, Rahman RU, Benito E, Fischer A, Dennerlein S, Rehling P, Feussner I, Bonn S, Simons M, Urlaub H, Rizzoli SO. Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions. Nat Commun. 2018 10 12; 9(1):4230. PMID: 30315172.
      Citations:    
    17. Rahman RU, Gautam A, Bethune J, Sattar A, Fiosins M, Magruder DS, Capece V, Shomroni O, Bonn S. Oasis 2: improved online analysis of small RNA-seq data. BMC Bioinformatics. 2018 02 14; 19(1):54. PMID: 29444641.
      Citations:    
    18. Hatje K, Rahman RU, Vidal RO, Simm D, Hammesfahr B, Bansal V, Rajput A, Mickael ME, Sun T, Bonn S, Kollmar M. The landscape of human mutually exclusive splicing. Mol Syst Biol. 2017 12 14; 13(12):959. PMID: 29242366.
      Citations:    
    19. Zeb F, Naqvi S, Rahman R, Farooq AD. Depressive symptoms, monoamines levels, MAO-B activity and effect of treatment in a subset of depressed individuals from government sector hospital at Karachi. Pak J Pharm Sci. 2017 Jul; 30(4(Suppl.)):1509-1519. PMID: 29044007.
      Citations:    
    20. Husain N, Chaudhry N, Furber C, Fayyaz H, Kiran T, Lunat F, Rahman RU, Farhan S, Fatima B. Group psychological intervention for maternal depression: A nested qualitative study from Karachi, Pakistan. World J Psychiatry. 2017 Jun 22; 7(2):98-105. PMID: 28713687.
      Citations:    
    21. Centeno TP, Shomroni O, Hennion M, Halder R, Vidal R, Rahman RU, Bonn S. Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. Sci Data. 2016 10 11; 3:160090. PMID: 27727234.
      Citations:    
    22. Halder R, Hennion M, Vidal RO, Shomroni O, Rahman RU, Rajput A, Centeno TP, van Bebber F, Capece V, Garcia Vizcaino JC, Schuetz AL, Burkhardt S, Benito E, Navarro Sala M, Javan SB, Haass C, Schmid B, Fischer A, Bonn S. DNA methylation changes in plasticity genes accompany the formation and maintenance of memory. Nat Neurosci. 2016 Jan; 19(1):102-10. PMID: 26656643.
      Citations:    
    23. Alonso-Barba JI, Rahman RU, Wittbrodt J, Mateo JL. MEPD: medaka expression pattern database, genes and more. Nucleic Acids Res. 2016 Jan 04; 44(D1):D819-21. PMID: 26450962.
      Citations:    
    24. Capece V, Garcia Vizcaino JC, Vidal R, Rahman RU, Pena Centeno T, Shomroni O, Suberviola I, Fischer A, Bonn S. Oasis: online analysis of small RNA deep sequencing data. Bioinformatics. 2015 Jul 01; 31(13):2205-7. PMID: 25701573.
      Citations:    
    25. Husain N, Afsar S, Ara J, Fayyaz H, Rahman RU, Tomenson B, Hamirani M, Chaudhry N, Fatima B, Husain M, Naeem F, Chaudhry IB. Brief psychological intervention after self-harm: randomised controlled trial from Pakistan. Br J Psychiatry. 2014 Jun; 204(6):462-70. PMID: 24676964.
      Citations:    
    26. Chaudhry IB, Husain N, Husain MO, Hallak J, Drake R, Kazmi A, Rahman Ru, Hamirani MM, Kiran T, Mehmood N, Stirling J, Dunn G, Deakin B. Ondansetron and simvastatin added to treatment as usual in patients with schizophrenia: study protocol for a randomized controlled trial. Trials. 2013 Apr 17; 14:101. PMID: 23782463.
      Citations:    
    27. Siddiqi MN, Yousafzai AW, Rahman RU. Pakistan: basic education essential to underpin reforms. Nature. 2009 Oct 15; 461(7266):874. PMID: 19829349.
      Citations:    
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