Software

"Software" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus, MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure, which enables searching at various levels of specificity.

MeSH information

Definition | Details | More General Concepts | Related Concepts | More Specific Concepts

Sequential operating programs and data which instruct the functioning of a digital computer.

Descriptor ID	D012984
MeSH Number(s)	L01.224.900
Concept/Terms	Software Software Computer Software Software, Computer Computer Programs Computer Program Program, Computer Programs, Computer Software Tools Software Tools Software Tool Tool, Software Tools, Software Software Engineering Software Engineering Engineering, Software Computer Applications Software Computer Applications Software Applications Software, Computer Applications Softwares, Computer Computer Applications Softwares Software, Computer Applications Softwares, Computer Applications Computer Software Applications Application, Computer Software Applications, Computer Software Computer Software Application Software Application, Computer Software Applications, Computer Computer Programs and Programming Computer Programs and Programming

Below are MeSH descriptors whose meaning is more general than "Software".

Information Science [L]
Information Science [L01]
Computing Methodologies [L01.224]
Software [L01.224.900]

Below are MeSH descriptors whose meaning is related to "Software".

Below are MeSH descriptors whose meaning is more specific than "Software".

publications

Timeline | Most Recent

This graph shows the total number of publications written about "Software" by people in this website by year, and whether "Software" was a major or minor topic of these publications.

Bar chart showing 310 publications over 29 distinct years, with a maximum of 19 publications in 2013 and 2015

To see the data from this visualization as text, click here.

Year	Major Topic	Minor Topic	Total
1995	1	1	2
1996	1	1	2
1999	0	2	2
2000	1	3	4
2001	0	2	2
2002	2	6	8
2003	2	6	8
2004	4	6	10
2005	1	12	13
2006	7	8	15
2007	5	10	15
2008	2	10	12
2009	8	7	15
2010	6	12	18
2011	5	6	11
2012	9	7	16
2013	7	12	19
2014	14	4	18
2015	10	9	19
2016	5	8	13
2017	3	6	9
2018	4	8	12
2019	4	8	12
2020	11	7	18
2021	7	8	15
2022	1	1	2
2023	3	3	6
2024	5	3	8
2025	6	0	6

Below are the most recent publications written about "Software" by people in Profiles.

Peng FZ, Wang C, Chen T, Schussheim B, Vincoff S, Chatterjee P. PTM-Mamba: a PTM-aware protein language model with bidirectional gated Mamba blocks. Nat Methods. 2025 May; 22(5):945-949.

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Laranjeira S, Guillemot-Legris O, Girmahun G, Phillips JB, Shipley RJ. Open-source software to calculate the static sciatic index automatically. Regen Med. 2025 Feb-Mar; 20(2-3):77-85.

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Seamann A, Bennett-Boehm M, Ehrlich R, Gil A, Selin L, Ghersi D. TRain: T-cell receptor automated immunoinformatics. BMC Bioinformatics. 2025 Mar 06; 26(1):76.

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Zhou P, Li Z, Liu F, Kwon E, Hsieh TC, Ye S, Vasudevan S, Lee JA, Tran KV, Zhou C. BAMBI integrates biostatistical and artificial intelligence methods to improve RNA biomarker discovery. Brief Bioinform. 2025 Mar 04; 26(2).

View in: PubMed
Honeywell ME, Lee MJ. MEDUSA for Identifying Death Regulatory Genes in Chemo-genetic Profiling Data. J Vis Exp. 2025 Feb 07; (216).

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Teicher G, Riffe RM, Barnaby W, Martin G, Clayton BE, Trapani JG, Downes GB. Marigold: a machine learning-based web app for zebrafish pose tracking. BMC Bioinformatics. 2025 Jan 28; 26(1):30.

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Elferich J, Kong L, Zottig X, Grigorieff N. CTFFIND5 provides improved insight into quality, tilt, and thickness of TEM samples. Elife. 2024 Dec 20; 13.

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Ou J, Liu H, Park S, Green MR, Zhu LJ. InPAS: An R/Bioconductor Package for Identifying Novel Polyadenylation Sites and Alternative Polyadenylation from Bulk RNA-seq Data. Front Biosci (Schol Ed). 2024 Dec 17; 16(4):21.

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Brink L, Romero RA, Coombs L, Tilkin M, Mazaheri S, Gichoya J, Zaiman Z, Trivedi H, Medina A, Bizzo BC, Chang K, Kalpathy-Cramer J, Kalra MK, Astuto B, Ramirez C, Majumdar S, Lee AY, Lee CI, Cross NM, Chen PH, Ciancibello M, Chiunda A, Nachand D, Shah C, Wald C. Multi-Institutional Evaluation and Training of Breast Density Classification AI Algorithm Using ACR Connect and AI-LAB. J Am Coll Radiol. 2025 Feb; 22(2):211-219.

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Puebla I, Ascoli GA, Blume J, Chodacki J, Finnell J, Kennedy DN, Mair B, Martone ME, Wittenberg J, Poline JB. Ten simple rules for recognizing data and software contributions in hiring, promotion, and tenure. PLoS Comput Biol. 2024 Aug; 20(8):e1012296.

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