Software

"Software" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus, MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure, which enables searching at various levels of specificity.

MeSH information

Definition | Details | More General Concepts | Related Concepts | More Specific Concepts

Sequential operating programs and data which instruct the functioning of a digital computer.

Descriptor ID	D012984
MeSH Number(s)	L01.224.900
Concept/Terms	Software Software Computer Software Software, Computer Computer Programs Computer Program Program, Computer Programs, Computer Software Tools Software Tools Software Tool Tool, Software Tools, Software Software Engineering Software Engineering Engineering, Software Computer Applications Software Computer Applications Software Applications Software, Computer Applications Softwares, Computer Computer Applications Softwares Software, Computer Applications Softwares, Computer Applications Computer Software Applications Application, Computer Software Applications, Computer Software Computer Software Application Software Application, Computer Software Applications, Computer Computer Programs and Programming Computer Programs and Programming

Below are MeSH descriptors whose meaning is more general than "Software".

Information Science [L]
Information Science [L01]
Computing Methodologies [L01.224]
Software [L01.224.900]

Below are MeSH descriptors whose meaning is related to "Software".

Below are MeSH descriptors whose meaning is more specific than "Software".

publications

Timeline | Most Recent

This graph shows the total number of publications written about "Software" by people in this website by year, and whether "Software" was a major or minor topic of these publications.

Bar chart showing 305 publications over 29 distinct years, with a maximum of 19 publications in 2013 and 2015

To see the data from this visualization as text, click here.

Year	Major Topic	Minor Topic	Total
1995	1	1	2
1996	1	1	2
1999	0	2	2
2000	1	3	4
2001	0	2	2
2002	2	6	8
2003	2	6	8
2004	4	6	10
2005	1	12	13
2006	7	8	15
2007	5	10	15
2008	2	10	12
2009	8	7	15
2010	6	12	18
2011	5	6	11
2012	9	7	16
2013	7	12	19
2014	14	4	18
2015	10	9	19
2016	5	8	13
2017	3	6	9
2018	4	8	12
2019	4	8	12
2020	11	7	18
2021	7	8	15
2022	1	1	2
2023	3	3	6
2024	5	3	8
2025	0	1	1

Below are the most recent publications written about "Software" by people in Profiles.

Teicher G, Riffe RM, Barnaby W, Martin G, Clayton BE, Trapani JG, Downes GB. Marigold: a machine learning-based web app for zebrafish pose tracking. BMC Bioinformatics. 2025 Jan 28; 26(1):30.

View in: PubMed
Elferich J, Kong L, Zottig X, Grigorieff N. CTFFIND5 provides improved insight into quality, tilt, and thickness of TEM samples. Elife. 2024 Dec 20; 13.

View in: PubMed
Ou J, Liu H, Park S, Green MR, Zhu LJ. InPAS: An R/Bioconductor Package for Identifying Novel Polyadenylation Sites and Alternative Polyadenylation from Bulk RNA-seq Data. Front Biosci (Schol Ed). 2024 Dec 17; 16(4):21.

View in: PubMed
Brink L, Romero RA, Coombs L, Tilkin M, Mazaheri S, Gichoya J, Zaiman Z, Trivedi H, Medina A, Bizzo BC, Chang K, Kalpathy-Cramer J, Kalra MK, Astuto B, Ramirez C, Majumdar S, Lee AY, Lee CI, Cross NM, Chen PH, Ciancibello M, Chiunda A, Nachand D, Shah C, Wald C. Multi-Institutional Evaluation and Training of Breast Density Classification AI Algorithm Using ACR Connect and AI-LAB. J Am Coll Radiol. 2025 Feb; 22(2):211-219.

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Puebla I, Ascoli GA, Blume J, Chodacki J, Finnell J, Kennedy DN, Mair B, Martone ME, Wittenberg J, Poline JB. Ten simple rules for recognizing data and software contributions in hiring, promotion, and tenure. PLoS Comput Biol. 2024 Aug; 20(8):e1012296.

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Huey JD, Abdennur N. Bigtools: a high-performance BigWig and BigBed library in Rust. Bioinformatics. 2024 06 03; 40(6).

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Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev SV. Pairtools: From sequencing data to chromosome contacts. PLoS Comput Biol. 2024 May; 20(5):e1012164.

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Seep L, Grein S, Splichalova I, Ran D, Mikhael M, Hildebrand S, Lauterbach M, Hiller K, Ribeiro DJS, Sieckmann K, Kardinal R, Huang H, Yu J, Kallabis S, Behrens J, Till A, Peeva V, Strohmeyer A, Bruder J, Blum T, Soriano-Arroquia A, Tischer D, Kuellmer K, Li Y, Beyer M, Gellner AK, Fromme T, Wackerhage H, Klingenspor M, Fenske WK, Scheja L, Meissner F, Schlitzer A, Mass E, Wachten D, Latz E, Pfeifer A, Hasenauer J. From Planning Stage Towards FAIR Data: A Practical Metadatasheet For Biomedical Scientists. Sci Data. 2024 May 22; 11(1):524.

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Abdennur N, Abraham S, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Oksuz BA, Venev SV, Xiao Y. Cooltools: Enabling high-resolution Hi-C analysis in Python. PLoS Comput Biol. 2024 May; 20(5):e1012067.

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Singer MB, Fu JJ, Chow J, Teng CC. Development and Evaluation of Aeyeconsult: A Novel Ophthalmology Chatbot Leveraging Verified Textbook Knowledge and GPT-4. J Surg Educ. 2024 Mar; 81(3):438-443.

View in: PubMed

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