Below are the most recent publications written about "Computational Biology" by people in Profiles.
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Zhao Y, Luquette LJ, Veit AD, Wang X, Xi R, Viswanadham VV, Zhang Y, Shao DD, Walsh CA, Yang HW, Johnson MD, Park PJ. High-resolution detection of copy number alterations in single cells with HiScanner. Nat Commun. 2025 Jul 01; 16(1):5477.
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Huang Z, Li Y, Bucci V, Haran JP. Decoding cancer prognosis with deep learning: the ASD-cancer framework for tumor microenvironment analysis. mSystems. 2025 May 20; 10(5):e0145524.
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Peng FZ, Wang C, Chen T, Schussheim B, Vincoff S, Chatterjee P. PTM-Mamba: a PTM-aware protein language model with bidirectional gated Mamba blocks. Nat Methods. 2025 May; 22(5):945-949.
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Seamann A, Bennett-Boehm M, Ehrlich R, Gil A, Selin L, Ghersi D. TRain: T-cell receptor automated immunoinformatics. BMC Bioinformatics. 2025 Mar 06; 26(1):76.
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Zhou P, Li Z, Liu F, Kwon E, Hsieh TC, Ye S, Vasudevan S, Lee JA, Tran KV, Zhou C. BAMBI integrates biostatistical and artificial intelligence methods to improve RNA biomarker discovery. Brief Bioinform. 2025 Mar 04; 26(2).
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Lotfi A, Caraeni D, Haider O, Pervaiz A, Modarres-Sadeghi Y. Computational fluid dynamics model utilizing proper orthogonal decomposition to assess coronary physiology and wall shear stress. Comput Biol Med. 2025 Apr; 188:109840.
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Ryu MH, Yun JH, Kim K, Gentili M, Ghosh A, Sciurba F, Barwick L, Limper A, Criner G, Brown KK, Wise R, Martinez FJ, Flaherty KR, Cho MH, Castaldi PJ, DeMeo DL, Silverman EK, Hersh CP, Morrow JD. Computational deconvolution of cell type-specific gene expression in COPD and IPF lungs reveals disease severity associations. BMC Genomics. 2024 Dec 18; 25(1):1192.
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Calvo-Roitberg E, Daniels RF, Pai AA. Challenges in identifying mRNA transcript starts and ends from long-read sequencing data. Genome Res. 2024 Nov 20; 34(11):1719-1734.
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Blanchard MW, Sigmon JS, Brennan J, Ahulamibe C, Allen ME, Ardery S, Baric RS, Bell TA, Farrington J, Ciavatta D, Cruz Cisneros MC, Drushal M, Ferris MT, Fry RC, Gaines C, Gu B, Heise MT, Hock P, Hodges RA, Hulgin M, Kafri T, Lynch RM, Magnuson T, Miller DR, Murphy CEY, Nguyen DT, Noll KE, Proulx MK, Sassetti CM, Schoenrock SA, Shaw GD, Simon JM, Smith CM, Styblo M, Tarantino LM, Woo J, Pardo Manuel de Villena F. The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice. G3 (Bethesda). 2024 Oct 07; 14(10).
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de Oliveira DC, Cheikh Sleiman H, Payette K, Hutter J, Story L, Hajnal JV, Alexander DC, Shipley RJ, Slator PJ. A flexible generative algorithm for growing in silico placentas. PLoS Comput Biol. 2024 Oct; 20(10):e1012470.