Below are the most recent publications written about "Computational Biology" by people in Profiles.
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Li X, Kong M, Smith MR, Liang Y, Teeny S, Ly VT, Go YM, Samala N, Jones DP, Luo J, Watson WH, McClain CJ, Vatsalya V, Szabo G, Dasarathy S, Mitchell M, Nagy LE, Barton B, Cave MC, Jiang H. Sparse CCA-based mediation analysis with high-dimensional exposures and mediators. Bioinformatics. 2026 Jul 02; 42(7).
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Elhajjajy SI, Weng Z. A novel NLP-based method and algorithm to discover RNA-binding protein (RBP) motifs, contexts, binding preferences, and interactions. RNA. 2026 05 18; 32(6):885-914.
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Funk MW, Wang Y, Wang L. Airqtl dissects cell state-specific causal gene regulatory networks with efficient single-cell eQTL mapping. Nat Commun. 2025 Dec 10; 16(1):11403.
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Zhao Y, Luquette LJ, Veit AD, Wang X, Xi R, Viswanadham VV, Zhang Y, Shao DD, Walsh CA, Yang HW, Johnson MD, Park PJ. High-resolution detection of copy number alterations in single cells with HiScanner. Nat Commun. 2025 Jul 01; 16(1):5477.
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Huang Z, Li Y, Bucci V, Haran JP. Decoding cancer prognosis with deep learning: the ASD-cancer framework for tumor microenvironment analysis. mSystems. 2025 May 20; 10(5):e0145524.
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Peng FZ, Wang C, Chen T, Schussheim B, Vincoff S, Chatterjee P. PTM-Mamba: a PTM-aware protein language model with bidirectional gated Mamba blocks. Nat Methods. 2025 May; 22(5):945-949.
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Seamann A, Bennett-Boehm M, Ehrlich R, Gil A, Selin L, Ghersi D. TRain: T-cell receptor automated immunoinformatics. BMC Bioinformatics. 2025 Mar 06; 26(1):76.
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Zhou P, Li Z, Liu F, Kwon E, Hsieh TC, Ye S, Vasudevan S, Lee JA, Tran KV, Zhou C. BAMBI integrates biostatistical and artificial intelligence methods to improve RNA biomarker discovery. Brief Bioinform. 2025 Mar 04; 26(2).
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Lotfi A, Caraeni D, Haider O, Pervaiz A, Modarres-Sadeghi Y. Computational fluid dynamics model utilizing proper orthogonal decomposition to assess coronary physiology and wall shear stress. Comput Biol Med. 2025 Apr; 188:109840.
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Ryu MH, Yun JH, Kim K, Gentili M, Ghosh A, Sciurba F, Barwick L, Limper A, Criner G, Brown KK, Wise R, Martinez FJ, Flaherty KR, Cho MH, Castaldi PJ, DeMeo DL, Silverman EK, Hersh CP, Morrow JD. Computational deconvolution of cell type-specific gene expression in COPD and IPF lungs reveals disease severity associations. BMC Genomics. 2024 Dec 18; 25(1):1192.