Position-Specific Scoring Matrices
"Position-Specific Scoring Matrices" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Tabular numerical representations of sequence motifs displaying their variability as likelihood values for each possible residue at each position in a sequence. Position-specific scoring matrices (PSSMs) are calculated from position frequency matrices.
| Descriptor ID |
D056510
|
| MeSH Number(s) |
E05.318.740.600.650 E05.393.760.670 G02.111.570.580.175.500
|
| Concept/Terms |
Position-Specific Scoring Matrices- Position-Specific Scoring Matrices
- Matrices, Position-Specific Scoring
- Position Specific Scoring Matrices
- Scoring Matrices, Position-Specific
- Position-Specific Weight Matrix
- Matrix, Position-Specific Weight
- Position Specific Weight Matrix
- Weight Matrix, Position-Specific
- Position-Specific Scoring Matrix
- Matrix, Position-Specific Scoring
- Position Specific Scoring Matrix
- Scoring Matrix, Position-Specific
- Position-Specific Weight Matrices
- Matrices, Position-Specific Weight
- Position Specific Weight Matrices
- Weight Matrices, Position-Specific
- Position Weight Matrices
- Matrices, Position Weight
- Weight Matrices, Position
- Position Weight Matrix
- Matrix, Position Weight
- Weight Matrix, Position
Sequence Logo- Sequence Logo
- Logo, Sequence
- Logos, Sequence
- Sequence Logos
|
Below are MeSH descriptors whose meaning is more general than "Position-Specific Scoring Matrices".
Below are MeSH descriptors whose meaning is more specific than "Position-Specific Scoring Matrices".
This graph shows the total number of publications written about "Position-Specific Scoring Matrices" by people in this website by year, and whether "Position-Specific Scoring Matrices" was a major or minor topic of these publications.
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click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2010 | 0 | 1 | 1 |
| 2013 | 0 | 1 | 1 |
| 2020 | 0 | 2 | 2 |
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Below are the most recent publications written about "Position-Specific Scoring Matrices" by people in Profiles.
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Ou J, Liu H, Nirala NK, Stukalov A, Acharya U, Green MR, Zhu LJ. dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data. PLoS One. 2020; 15(11):e0242030.
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Pratt H, Weng Z. LogoJS: a Javascript package for creating sequence logos and embedding them in web applications. Bioinformatics. 2020 06 01; 36(11):3573-3575.
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Enuameh MS, Asriyan Y, Richards A, Christensen RG, Hall VL, Kazemian M, Zhu C, Pham H, Cheng Q, Blatti C, Brasefield JA, Basciotta MD, Ou J, McNulty JC, Zhu LJ, Celniker SE, Sinha S, Stormo GD, Brodsky MH, Wolfe SA. Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Res. 2013 Jun; 23(6):928-40.
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Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Res. 2011 Mar; 21(3):447-55.