Nucleotide Motifs

"Nucleotide Motifs" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus, MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure, which enables searching at various levels of specificity.

MeSH information

Definition | Details | More General Concepts | Related Concepts | More Specific Concepts

Commonly observed BASE SEQUENCE or nucleotide structural components which can be represented by a CONSENSUS SEQUENCE or a SEQUENCE LOGO.

Descriptor ID	D059372
MeSH Number(s)	G02.111.570.080.611 G02.111.570.820.486.662 G05.360.080.611 G05.360.580.662
Concept/Terms	Nucleotide Motifs Nucleotide Motifs Nucleotide Motif Motif, Nucleotide Motifs, Nucleotide RNA Motifs RNA Motifs Motif, RNA Motifs, RNA RNA Motif DNA Motifs DNA Motifs Motif, DNA Motifs, DNA DNA Motif

Below are MeSH descriptors whose meaning is more general than "Nucleotide Motifs".

Biological Sciences [G]
Chemical Phenomena [G02]
Biochemical Phenomena [G02.111]
Molecular Structure [G02.111.570]
Base Sequence [G02.111.570.080]
Nucleotide Motifs [G02.111.570.080.611]
Molecular Conformation [G02.111.570.820]
Nucleic Acid Conformation [G02.111.570.820.486]
Nucleotide Motifs [G02.111.570.820.486.662]
Genetic Phenomena [G05]
Genetic Structures [G05.360]
Base Sequence [G05.360.080]
Nucleotide Motifs [G05.360.080.611]
Nucleic Acid Conformation [G05.360.580]
Nucleotide Motifs [G05.360.580.662]

Below are MeSH descriptors whose meaning is related to "Nucleotide Motifs".

Below are MeSH descriptors whose meaning is more specific than "Nucleotide Motifs".

publications

Timeline | Most Recent

This graph shows the total number of publications written about "Nucleotide Motifs" by people in this website by year, and whether "Nucleotide Motifs" was a major or minor topic of these publications.

Bar chart showing 32 publications over 13 distinct years, with a maximum of 6 publications in 2012 and 2014

To see the data from this visualization as text, click here.

Year	Major Topic	Minor Topic	Total
2011	0	2	2
2012	0	6	6
2013	2	2	4
2014	1	5	6
2015	0	2	2
2016	0	2	2
2017	1	1	2
2018	1	2	3
2019	0	1	1
2020	1	0	1
2021	0	1	1
2022	1	0	1
2024	1	0	1

Below are the most recent publications written about "Nucleotide Motifs" by people in Profiles.

Bonnell VA, Zhang Y, Brown AS, Horton J, Josling GA, Chiu TP, Rohs R, Mahony S, Gord?n R, Llin?s M. DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum. Nucleic Acids Res. 2024 Sep 23; 52(17):10161-10179.

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Pratt HE, Andrews GR, Phalke N, Purcaro MJ, van der Velde A, Moore JE, Weng Z. Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites. Nucleic Acids Res. 2022 01 07; 50(D1):D141-D149.

View in: PubMed
Taylor SR, Santpere G, Weinreb A, Barrett A, Reilly MB, Xu C, Varol E, Oikonomou P, Glenwinkel L, McWhirter R, Poff A, Basavaraju M, Rafi I, Yemini E, Cook SJ, Abrams A, Vidal B, Cros C, Tavazoie S, Sestan N, Hammarlund M, Hobert O, Miller DM. Molecular topography of an entire nervous system. Cell. 2021 08 05; 184(16):4329-4347.e23.

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Chatterjee P, Lee J, Nip L, Koseki SRT, Tysinger E, Sontheimer EJ, Jacobson JM, Jakimo N. A Cas9 with PAM recognition for adenine dinucleotides. Nat Commun. 2020 05 18; 11(1):2474.

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Oomen ME, Hansen AS, Liu Y, Darzacq X, Dekker J. CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning. Genome Res. 2019 02; 29(2):236-249.

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Edraki A, Mir A, Ibraheim R, Gainetdinov I, Yoon Y, Song CQ, Cao Y, Gallant J, Xue W, Rivera-P?rez JA, Sontheimer EJ. A Compact, High-Accuracy Cas9 with a Dinucleotide PAM for In?Vivo Genome Editing. Mol Cell. 2019 Feb 21; 73(4):714-726.e4.

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Shen N, Zhao J, Schipper JL, Zhang Y, Bepler T, Leehr D, Bradley J, Horton J, Lapp H, Gordan R. Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In?Vivo Binding. Cell Syst. 2018 Apr 25; 6(4):470-483.e8.

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Ou J, Wolfe SA, Brodsky MH, Zhu LJ. motifStack for the analysis of transcription factor binding site evolution. Nat Methods. 2018 01 03; 15(1):8-9.

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Steinhagen F, Zillinger T, Peukert K, Fox M, Thudium M, Barchet W, Putensen C, Klinman D, Latz E, Bode C. Suppressive oligodeoxynucleotides containing TTAGGG motifs inhibit cGAS activation in human monocytes. Eur J Immunol. 2018 04; 48(4):605-611.

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Pearring JN, San Agustin JT, Lobanova ES, Gabriel CJ, Lieu EC, Monis WJ, Stuck MW, Strittmatter L, Jaber SM, Arshavsky VY, Pazour GJ. Loss of Arf4 causes severe degeneration of the exocrine pancreas but not cystic kidney disease or retinal degeneration. PLoS Genet. 2017 04; 13(4):e1006740.

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